Archivio Istituzionale della RicercaBARDINI, ROBERTA
BARDINI, ROBERTA
Dipartimento di Automatica e Informatica
039474
From sketch to landscape: Transforming neuronal concepts across technological change
2025 Bardini, Roberta
Start & Stop: a PhysiCell and PhysiBoSS 2.0 add-on for interactive simulation control
2025 Smeriglio, Riccardo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano
A methodology combining reinforcement learning and simulation to optimize the in silico culture of epithelial sheets
2024 Castrignanò, Alberto; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano
Biology System Description Language (BiSDL): a modeling language for the design of multicellular synthetic biological systems
2024 Giannantoni, Leonardo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano
Computational methods for biofabrication in tissue engineering and regenerative medicine - a literature review
2024 Bardini, Roberta; Di Carlo, Stefano
Cross-omic Transcription Factors meta-analysis: an insight on TFs accessibility and expression correlation
2024 Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano
Fast and Accurate LSTM Meta-modeling of TNF-induced Tumor Resistance In Vitro
2024 Abrate, Marco P; Smeriglio, Riccardo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano
Knowledge-generation Platform For Unravelling Bone Regeneration Mechanisms Induced By Biophysical Stimuli
2024 Gabetti, S; Daou, F; Masante, B; Scatena, E; Zenobi, E; Sanginario, A; Israel, S; Canova, A; Bardini, R; Benso, A; Rimondini, L; Bignardi, C; Cochis, A; Massai, D
Neuronal Spike Shapes (NSS): A straightforward approach to investigate heterogeneity in neuronal excitability states
2024 Martini, Lorenzo; Amprimo, Gianluca; Di Carlo, Stefano; Olmo, Gabriella; Ferraris, Claudia; Savino, Alessandro; Bardini, Roberta
Security Layers and Related Services within the Horizon Europe NEUROPULS Project
2024 Pavanello, Fabio; Marchand, Cedric; Jimenez, Paul; Letartre, Xavier; Chaves, Ricardo; Marastoni, Niccolò; Lovato, Alberto; Ceccato, Mariano; Papadimitriou, George; Karakostas, Vasileios; Gizopoulos, Dimitris; Bardini, Roberta; Carmona, Tzamn Melendez; Di Carlo, Stefano; Savino, Alessandro; Lerch, Laurence; Ruhrmair, Ulrich; Gutiérrez, Sergio Vinagrero; Di Natale, Giorgio; Vatajelu, Elena Ioana
GAGAM v1.2: An Improvement on Peak Labeling and Genomic Annotated Gene Activity Matrix Construction
2023 Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; DI CARLO, Stefano
GRAIGH: Gene Regulation accessibility integrating GeneHancer database
2023 Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano
Meta-analysis of Gene Activity (MAGA) Contributions and Correlation with Gene Expression, Through GAGAM
2023 Martini, L.; Bardini, R.; Savino, A.; Di Carlo, S.
A Methodology for Co-simulation-Based Optimization of Biofabrication Protocols
2022 Giannantoni, L; Bardini, R; Di Carlo, S
GAGAM: A Genomic Annotation-Based Enrichment of scATAC-seq Data for Gene Activity Matrix
2022 Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; DI CARLO, Stefano
High-resolution sample size enrichment of single-cell multi-modal low-throughput Patch-seq datasets
2022 Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano
Meta-Analysis of cortical inhibitory interneurons markers landscape and their performances in scRNA-seq studies.
2021 Martini, Lorenzo; Bardini, Roberta; DI CARLO, Stefano
Nets-within-nets for modeling emergent patterns in ontogenetic processes
2021 Bardini, Roberta; Benso, Alfredo; Politano, Gianfranco; Di Carlo, Stefano
Metodo computerizzato per generare protocolli di coltura per bio-manufacturing
2020 Bardini, Roberta; Di Carlo, Stefano; Benso, Alfredo; Politano, Gianfranco
A diversity-aware computational framework for systems biology
2019 Bardini, Roberta
| Citazione | Data di pubblicazione | Autori | File |
|---|---|---|---|
| From sketch to landscape: Transforming neuronal concepts across technological change / Bardini, Roberta - In: Systems Biology and In-Depth Applications for Unlocking Diseases / Sokouti, B.. - ELETTRONICO. - [s.l] : Elsevier - Academic Press, 2025. - ISBN 9780443223266. - pp. 37-52 [10.1016/b978-0-443-22326-6.00004-3] | 1-gen-2025 | Bardini, Roberta | SOKOUTI_9780443223273.pdf |
| Start & Stop: a PhysiCell and PhysiBoSS 2.0 add-on for interactive simulation control / Smeriglio, Riccardo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano. - In: BMC BIOINFORMATICS. - ISSN 1471-2105. - ELETTRONICO. - 26:(2025). [10.1186/s12859-025-06144-x] | 1-gen-2025 | Smeriglio, RiccardoBardini, RobertaSavino, AlessandroDi Carlo, Stefano | public_version.pdf |
| A methodology combining reinforcement learning and simulation to optimize the in silico culture of epithelial sheets / Castrignanò, Alberto; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano. - In: JOURNAL OF COMPUTATIONAL SCIENCE. - ISSN 1877-7503. - ELETTRONICO. - 76:(2024), pp. 1-20. [10.1016/j.jocs.2024.102226] | 1-gen-2024 | Bardini, RobertaSavino, AlessandroDi Carlo, Stefano + | 1-s2.0-S187775032400019X-main (1).pdf |
| Biology System Description Language (BiSDL): a modeling language for the design of multicellular synthetic biological systems / Giannantoni, Leonardo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano. - In: BMC BIOINFORMATICS. - ISSN 1471-2105. - ELETTRONICO. - 25:1(2024), pp. 1-33. [10.1186/s12859-024-05782-x] | 1-gen-2024 | Giannantoni, LeonardoBardini, RobertaSavino, AlessandroDi Carlo, Stefano | s12859-024-05782-x.pdf; 12859_2024_5782_MOESM1_ESM.pdf |
| Computational methods for biofabrication in tissue engineering and regenerative medicine - a literature review / Bardini, Roberta; Di Carlo, Stefano. - In: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. - ISSN 2001-0370. - STAMPA. - 23:(2024), pp. 601-616. [10.1016/j.csbj.2023.12.035] | 1-gen-2024 | Bardini, RobertaDi Carlo, Stefano | PIIS2001037023005111.pdf |
| Cross-omic Transcription Factors meta-analysis: an insight on TFs accessibility and expression correlation / Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano. - In: GENES. - ISSN 2073-4425. - ELETTRONICO. - 15:3(2024), pp. 1-16. [10.3390/genes15030268] | 1-gen-2024 | Martini, LorenzoBardini, RobertaSavino, AlessandroDi Carlo, Stefano | genes-15-00268.pdf |
| Fast and Accurate LSTM Meta-modeling of TNF-induced Tumor Resistance In Vitro / Abrate, Marco P; Smeriglio, Riccardo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano. - ELETTRONICO. - (2024), pp. 6194-6201. (Intervento presentato al convegno 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) tenutosi a Lisbon (PRT) nel 03-06 December 2024) [10.1109/BIBM62325.2024.10822769]. | 1-gen-2024 | Abrate, Marco PSmeriglio, RiccardoBardini, RobertaSavino, AlessandroDi Carlo, Stefano | Fast_and_Accurate_LSTM_Meta-modeling_of_TNF-induced_Tumor_Resistance_In_Vitro.pdf; Paper___BIBM_2024__.pdf |
| Knowledge-generation Platform For Unravelling Bone Regeneration Mechanisms Induced By Biophysical Stimuli / Gabetti, S; Daou, F; Masante, B; Scatena, E; Zenobi, E; Sanginario, A; Israel, S; Canova, A; Bardini, R; Benso, A; Rimondini, L; Bignardi, C; Cochis, A; Massai, D. - In: TISSUE ENGINEERING, PART A. - ISSN 1937-3341. - 30:15-16(2024), pp. S35-S35. | 1-gen-2024 | Gabetti, SMasante, BSanginario, AIsrael, SCanova, ABardini, RBenso, ABignardi, CMassai, D + | - |
| Neuronal Spike Shapes (NSS): A straightforward approach to investigate heterogeneity in neuronal excitability states / Martini, Lorenzo; Amprimo, Gianluca; Di Carlo, Stefano; Olmo, Gabriella; Ferraris, Claudia; Savino, Alessandro; Bardini, Roberta. - In: COMPUTERS IN BIOLOGY AND MEDICINE. - ISSN 0010-4825. - ELETTRONICO. - 168:(2024), pp. 1-15. [10.1016/j.compbiomed.2023.107783] | 1-gen-2024 | Martini, LorenzoAmprimo, GianlucaDi Carlo, StefanoOlmo, GabriellaSavino, AlessandroBardini, Roberta + | 1-s2.0-S0010482523012489-main.pdf |
| Security Layers and Related Services within the Horizon Europe NEUROPULS Project / Pavanello, Fabio; Marchand, Cedric; Jimenez, Paul; Letartre, Xavier; Chaves, Ricardo; Marastoni, Niccolò; Lovato, Alberto; Ceccato, Mariano; Papadimitriou, George; Karakostas, Vasileios; Gizopoulos, Dimitris; Bardini, Roberta; Carmona, Tzamn Melendez; Di Carlo, Stefano; Savino, Alessandro; Lerch, Laurence; Ruhrmair, Ulrich; Gutiérrez, Sergio Vinagrero; Di Natale, Giorgio; Vatajelu, Elena Ioana. - ELETTRONICO. - (2024), pp. 1-6. (Intervento presentato al convegno 2024 Design, Automation & Test in Europe Conference & Exhibition (DATE) tenutosi a Valencia (ESP) nel 25-27 March 2024) [10.23919/date58400.2024.10546706]. | 1-gen-2024 | Bardini, RobertaCarmona, Tzamn MelendezDi Carlo, StefanoSavino, Alessandro + | Security_Layers_and_Related_Services_within_the_Horizon_Europe_NEUROPULS_Project.pdf; DATE2024-Neuropuls.pdf |
| GAGAM v1.2: An Improvement on Peak Labeling and Genomic Annotated Gene Activity Matrix Construction / Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; DI CARLO, Stefano. - In: GENES. - ISSN 2073-4425. - ELETTRONICO. - 14:1(2023). [10.3390/genes14010115] | 1-gen-2023 | Lorenzo MartiniRoberta BardiniAlessandro SavinoStefano Di Carlo | genes-14-00115.pdf |
| GRAIGH: Gene Regulation accessibility integrating GeneHancer database / Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano. - ELETTRONICO. - (2023), pp. 343-348. (Intervento presentato al convegno 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) tenutosi a Istanbul (Turkey) nel Dec. 5-8, 2023) [10.1109/BIBM58861.2023.10385417]. | 1-gen-2023 | Martini, LorenzoBardini, RobertaSavino, AlessandroDi Carlo, Stefano | GRAIGH_Gene_Regulation_accessibility_integrating_GeneHancer_database.pdf; Paper___BIBM_2023___GRAIGH (3).pdf |
| Meta-analysis of Gene Activity (MAGA) Contributions and Correlation with Gene Expression, Through GAGAM / Martini, L.; Bardini, R.; Savino, A.; Di Carlo, S.. - ELETTRONICO. - 13920:(2023), pp. 193-207. (Intervento presentato al convegno 10th International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2023) tenutosi a Meloneras, Gran Canaria (ESP) nel 12-14 July 2023) [10.1007/978-3-031-34960-7_14]. | 1-gen-2023 | Martini L.Bardini R.Savino A.Di Carlo S. | 978-3-031-34960-7_14.pdf; IWBBIO23-MAGA.pdf |
| A Methodology for Co-simulation-Based Optimization of Biofabrication Protocols / Giannantoni, L; Bardini, R; Di Carlo, S. - ELETTRONICO. - 13347:(2022), pp. 179-192. (Intervento presentato al convegno International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO) 2022 tenutosi a Gran Canaria nel Jun. 27-30, 2022) [10.1007/978-3-031-07802-6_16]. | 1-gen-2022 | Giannantoni LBardini RDi Carlo S | 2022.01.28.478198.full.pdf; 978-3-031-07802-6_16.pdf; paper_91.pdf |
| GAGAM: A Genomic Annotation-Based Enrichment of scATAC-seq Data for Gene Activity Matrix / Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; DI CARLO, Stefano. - ELETTRONICO. - 13347:(2022), pp. 18-32. (Intervento presentato al convegno International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO) 2022 tenutosi a Gran Canaria nel Jun. 27-30, 2022) [10.1007/978-3-031-07802-6_2]. | 1-gen-2022 | Lorenzo MartiniRoberta BardiniAlessandro SavinoStefano Di Carlo | Martini2022_Chapter_GAGAMAGenomicAnnotation-BasedE.pdf; IWBBIO_2022___Single_Cell (2).pdf |
| High-resolution sample size enrichment of single-cell multi-modal low-throughput Patch-seq datasets / Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano. - ELETTRONICO. - (2022), pp. 2334-2341. (Intervento presentato al convegno 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) tenutosi a Las Vegas (USA) nel Dec. 6-8, 2022) [10.1109/BIBM55620.2022.9995529]. | 1-gen-2022 | Martini, LorenzoBardini, RobertaSavino, AlessandroDi Carlo, Stefano | High-resolution_sample_size_enrichment_of_single-cell_multi-modal_low-throughput_Patch-seq_datasets.pdf; 2022___IEEE_BIBM___Number_cells_enrichment (1).pdf |
| Meta-Analysis of cortical inhibitory interneurons markers landscape and their performances in scRNA-seq studies / Martini, Lorenzo; Bardini, Roberta; DI CARLO, Stefano. - ELETTRONICO. - (2021), pp. 253-258. (Intervento presentato al convegno 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) tenutosi a Houston (USA) nel Dec. 9-12, 2021) [10.1109/bibm52615.2021.9669888]. | 1-gen-2021 | Lorenzo MartiniRoberta BardiniStefano Di Carlo | 2021___IEE_BIBM.pdf; Meta-Analysis_of_cortical_inhibitory_interneurons_markers_landscape_and_their_performances_in_scRNA-seq_studies..pdf |
| Nets-within-nets for modeling emergent patterns in ontogenetic processes / Bardini, Roberta; Benso, Alfredo; Politano, Gianfranco; Di Carlo, Stefano. - In: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. - ISSN 2001-0370. - ELETTRONICO. - 19:(2021), pp. 5701-5721. [10.1016/j.csbj.2021.10.008] | 1-gen-2021 | Bardini, RobertaBenso, AlfredoPolitano, GianfrancoDi Carlo, Stefano | NWN_CElegans.pdf; 1-s2.0-S200103702100430X-main.pdf |
| Metodo computerizzato per generare protocolli di coltura per bio-manufacturing / Bardini, Roberta; Di Carlo, Stefano; Benso, Alfredo; Politano, Gianfranco. - (2020). | 1-gen-2020 | Bardini, RobertaDi Carlo, StefanoBenso, AlfredoPolitano, Gianfranco | - |
| A diversity-aware computational framework for systems biology / Bardini, Roberta. - (2019 Sep 18), pp. 1-147. | 18-set-2019 | BARDINI, ROBERTA | conv_bardini_phd_thesis_v1.pdf; conv_phd_thesis_abstract_bardini.pdf |