Archivio Istituzionale della RicercaBARDINI, ROBERTA
BARDINI, ROBERTA
Dipartimento di Automatica e Informatica
039474
A methodology combining reinforcement learning and simulation to optimize the in silico culture of epithelial sheets
2024 Castrignanò, Alberto; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano
Biology System Description Language (BiSDL): a modeling language for the design of multicellular synthetic biological systems
2024 Giannantoni, Leonardo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano
Computational methods for biofabrication in tissue engineering and regenerative medicine - a literature review
2024 Bardini, Roberta; Di Carlo, Stefano
Cross-omic Transcription Factors meta-analysis: an insight on TFs accessibility and expression correlation
2024 Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano
Neuronal Spike Shapes (NSS): A straightforward approach to investigate heterogeneity in neuronal excitability states
2024 Martini, Lorenzo; Amprimo, Gianluca; Di Carlo, Stefano; Olmo, Gabriella; Ferraris, Claudia; Savino, Alessandro; Bardini, Roberta
Security Layers and Related Services within the Horizon Europe NEUROPULS Project
2024 Pavanello, Fabio; Marchand, Cedric; Jimenez, Paul; Letartre, Xavier; Chaves, Ricardo; Marastoni, Niccolò; Lovato, Alberto; Ceccato, Mariano; Papadimitriou, George; Karakostas, Vasileios; Gizopoulos, Dimitris; Bardini, Roberta; Carmona, Tzamn Melendez; Di Carlo, Stefano; Savino, Alessandro; Lerch, Laurence; Ruhrmair, Ulrich; Gutiérrez, Sergio Vinagrero; Di Natale, Giorgio; Vatajelu, Elena Ioana
GAGAM v1.2: An Improvement on Peak Labeling and Genomic Annotated Gene Activity Matrix Construction
2023 Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; DI CARLO, Stefano
GRAIGH: Gene Regulation accessibility integrating GeneHancer database
2023 Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano
Meta-analysis of Gene Activity (MAGA) Contributions and Correlation with Gene Expression, Through GAGAM
2023 Martini, L.; Bardini, R.; Savino, A.; Di Carlo, S.
A Methodology for Co-simulation-Based Optimization of Biofabrication Protocols
2022 Giannantoni, L; Bardini, R; Di Carlo, S
GAGAM: A Genomic Annotation-Based Enrichment of scATAC-seq Data for Gene Activity Matrix
2022 Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; DI CARLO, Stefano
High-resolution sample size enrichment of single-cell multi-modal low-throughput Patch-seq datasets
2022 Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano
Meta-Analysis of cortical inhibitory interneurons markers landscape and their performances in scRNA-seq studies.
2021 Martini, Lorenzo; Bardini, Roberta; DI CARLO, Stefano
Nets-within-nets for modeling emergent patterns in ontogenetic processes
2021 Bardini, Roberta; Benso, Alfredo; Politano, Gianfranco; Di Carlo, Stefano
Metodo computerizzato per generare protocolli di coltura per bio-manufacturing
2020 Bardini, Roberta; Di Carlo, Stefano; Benso, Alfredo; Politano, Gianfranco
A diversity-aware computational framework for systems biology
2019 Bardini, Roberta
Metodo di simulazione via computer dell'ontogenesi di un sistema biologico e, opzionalmente, di generazione di un protocollo di coltura
2019 Bardini, Roberta; Di Carlo, Stefano; Benso, Alfredo; Politano, Gianfranco
Computational Tools for Applying Multi-level Models to Synthetic Biology
2018 Bardini, R.; Politano, G.; Benso, A.; Di Carlo, S.
Modeling antibiotic resistance in the microbiota using Multi-level Petri Nets
2018 Bardini, Roberta; DI CARLO, Stefano; Politano, GIANFRANCO MICHELE MARIA; Benso, Alfredo
Modeling biological complexity using Biology System Description Language (BiSDL)
2018 Muggianu, Flavia; Benso, A.; Bardini, R.; Hu, E.; Politano, G.; Carlo, S. Di
| Citazione | Data di pubblicazione | Autori | File |
|---|---|---|---|
| A methodology combining reinforcement learning and simulation to optimize the in silico culture of epithelial sheets / Castrignanò, Alberto; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano. - In: JOURNAL OF COMPUTATIONAL SCIENCE. - ISSN 1877-7503. - ELETTRONICO. - 76:(2024), pp. 1-20. [10.1016/j.jocs.2024.102226] | 1-gen-2024 | Bardini, RobertaSavino, AlessandroDi Carlo, Stefano + | 1-s2.0-S187775032400019X-main (1).pdf |
| Biology System Description Language (BiSDL): a modeling language for the design of multicellular synthetic biological systems / Giannantoni, Leonardo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano. - In: BMC BIOINFORMATICS. - ISSN 1471-2105. - ELETTRONICO. - 25:1(2024), pp. 1-33. [10.1186/s12859-024-05782-x] | 1-gen-2024 | Giannantoni, LeonardoBardini, RobertaSavino, AlessandroDi Carlo, Stefano | s12859-024-05782-x.pdf; 12859_2024_5782_MOESM1_ESM.pdf |
| Computational methods for biofabrication in tissue engineering and regenerative medicine - a literature review / Bardini, Roberta; Di Carlo, Stefano. - In: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. - ISSN 2001-0370. - STAMPA. - 23:(2024), pp. 601-616. [10.1016/j.csbj.2023.12.035] | 1-gen-2024 | Bardini, RobertaDi Carlo, Stefano | PIIS2001037023005111.pdf |
| Cross-omic Transcription Factors meta-analysis: an insight on TFs accessibility and expression correlation / Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano. - In: GENES. - ISSN 2073-4425. - ELETTRONICO. - 15:3(2024), pp. 1-16. [10.3390/genes15030268] | 1-gen-2024 | Martini, LorenzoBardini, RobertaSavino, AlessandroDi Carlo, Stefano | genes-15-00268.pdf |
| Neuronal Spike Shapes (NSS): A straightforward approach to investigate heterogeneity in neuronal excitability states / Martini, Lorenzo; Amprimo, Gianluca; Di Carlo, Stefano; Olmo, Gabriella; Ferraris, Claudia; Savino, Alessandro; Bardini, Roberta. - In: COMPUTERS IN BIOLOGY AND MEDICINE. - ISSN 0010-4825. - ELETTRONICO. - 168:(2024), pp. 1-15. [10.1016/j.compbiomed.2023.107783] | 1-gen-2024 | Martini, LorenzoAmprimo, GianlucaDi Carlo, StefanoOlmo, GabriellaSavino, AlessandroBardini, Roberta + | 1-s2.0-S0010482523012489-main.pdf |
| Security Layers and Related Services within the Horizon Europe NEUROPULS Project / Pavanello, Fabio; Marchand, Cedric; Jimenez, Paul; Letartre, Xavier; Chaves, Ricardo; Marastoni, Niccolò; Lovato, Alberto; Ceccato, Mariano; Papadimitriou, George; Karakostas, Vasileios; Gizopoulos, Dimitris; Bardini, Roberta; Carmona, Tzamn Melendez; Di Carlo, Stefano; Savino, Alessandro; Lerch, Laurence; Ruhrmair, Ulrich; Gutiérrez, Sergio Vinagrero; Di Natale, Giorgio; Vatajelu, Elena Ioana. - ELETTRONICO. - (2024), pp. 1-6. (Intervento presentato al convegno 2024 Design, Automation & Test in Europe Conference & Exhibition (DATE) tenutosi a Valencia (ESP) nel 25-27 March 2024) [10.23919/date58400.2024.10546706]. | 1-gen-2024 | Bardini, RobertaCarmona, Tzamn MelendezDi Carlo, StefanoSavino, Alessandro + | Security_Layers_and_Related_Services_within_the_Horizon_Europe_NEUROPULS_Project.pdf; DATE2024-Neuropuls.pdf |
| GAGAM v1.2: An Improvement on Peak Labeling and Genomic Annotated Gene Activity Matrix Construction / Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; DI CARLO, Stefano. - In: GENES. - ISSN 2073-4425. - ELETTRONICO. - 14:1(2023). [10.3390/genes14010115] | 1-gen-2023 | Lorenzo MartiniRoberta BardiniAlessandro SavinoStefano Di Carlo | genes-14-00115.pdf |
| GRAIGH: Gene Regulation accessibility integrating GeneHancer database / Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano. - ELETTRONICO. - (2023), pp. 343-348. (Intervento presentato al convegno 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) tenutosi a Istanbul (Turkey) nel Dec. 5-8, 2023) [10.1109/BIBM58861.2023.10385417]. | 1-gen-2023 | Martini, LorenzoBardini, RobertaSavino, AlessandroDi Carlo, Stefano | GRAIGH_Gene_Regulation_accessibility_integrating_GeneHancer_database.pdf; Paper___BIBM_2023___GRAIGH (3).pdf |
| Meta-analysis of Gene Activity (MAGA) Contributions and Correlation with Gene Expression, Through GAGAM / Martini, L.; Bardini, R.; Savino, A.; Di Carlo, S.. - ELETTRONICO. - 13920:(2023), pp. 193-207. (Intervento presentato al convegno 10th International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2023) tenutosi a Meloneras, Gran Canaria (ESP) nel 12-14 July 2023) [10.1007/978-3-031-34960-7_14]. | 1-gen-2023 | Martini L.Bardini R.Savino A.Di Carlo S. | 978-3-031-34960-7_14.pdf; IWBBIO23-MAGA.pdf |
| A Methodology for Co-simulation-Based Optimization of Biofabrication Protocols / Giannantoni, L; Bardini, R; Di Carlo, S. - ELETTRONICO. - 13347:(2022), pp. 179-192. (Intervento presentato al convegno International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO) 2022 tenutosi a Gran Canaria nel Jun. 27-30, 2022) [10.1007/978-3-031-07802-6_16]. | 1-gen-2022 | Giannantoni LBardini RDi Carlo S | 2022.01.28.478198.full.pdf; 978-3-031-07802-6_16.pdf; paper_91.pdf |
| GAGAM: A Genomic Annotation-Based Enrichment of scATAC-seq Data for Gene Activity Matrix / Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; DI CARLO, Stefano. - ELETTRONICO. - 13347:(2022), pp. 18-32. (Intervento presentato al convegno International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO) 2022 tenutosi a Gran Canaria nel Jun. 27-30, 2022) [10.1007/978-3-031-07802-6_2]. | 1-gen-2022 | Lorenzo MartiniRoberta BardiniAlessandro SavinoStefano Di Carlo | Martini2022_Chapter_GAGAMAGenomicAnnotation-BasedE.pdf; IWBBIO_2022___Single_Cell (2).pdf |
| High-resolution sample size enrichment of single-cell multi-modal low-throughput Patch-seq datasets / Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano. - ELETTRONICO. - (2022), pp. 2334-2341. (Intervento presentato al convegno 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) tenutosi a Las Vegas (USA) nel Dec. 6-8, 2022) [10.1109/BIBM55620.2022.9995529]. | 1-gen-2022 | Martini, LorenzoBardini, RobertaSavino, AlessandroDi Carlo, Stefano | High-resolution_sample_size_enrichment_of_single-cell_multi-modal_low-throughput_Patch-seq_datasets.pdf; 2022___IEEE_BIBM___Number_cells_enrichment (1).pdf |
| Meta-Analysis of cortical inhibitory interneurons markers landscape and their performances in scRNA-seq studies / Martini, Lorenzo; Bardini, Roberta; DI CARLO, Stefano. - ELETTRONICO. - (2021), pp. 253-258. (Intervento presentato al convegno 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) tenutosi a Houston (USA) nel Dec. 9-12, 2021) [10.1109/bibm52615.2021.9669888]. | 1-gen-2021 | Lorenzo MartiniRoberta BardiniStefano Di Carlo | 2021___IEE_BIBM.pdf; Meta-Analysis_of_cortical_inhibitory_interneurons_markers_landscape_and_their_performances_in_scRNA-seq_studies..pdf |
| Nets-within-nets for modeling emergent patterns in ontogenetic processes / Bardini, Roberta; Benso, Alfredo; Politano, Gianfranco; Di Carlo, Stefano. - In: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. - ISSN 2001-0370. - ELETTRONICO. - 19:(2021), pp. 5701-5721. [10.1016/j.csbj.2021.10.008] | 1-gen-2021 | Bardini, RobertaBenso, AlfredoPolitano, GianfrancoDi Carlo, Stefano | NWN_CElegans.pdf; 1-s2.0-S200103702100430X-main.pdf |
| Metodo computerizzato per generare protocolli di coltura per bio-manufacturing / Bardini, Roberta; Di Carlo, Stefano; Benso, Alfredo; Politano, Gianfranco. - (2020). | 1-gen-2020 | Bardini, RobertaDi Carlo, StefanoBenso, AlfredoPolitano, Gianfranco | - |
| A diversity-aware computational framework for systems biology / Bardini, Roberta. - (2019 Sep 18), pp. 1-147. | 18-set-2019 | BARDINI, ROBERTA | conv_bardini_phd_thesis_v1.pdf; conv_phd_thesis_abstract_bardini.pdf |
| Metodo di simulazione via computer dell'ontogenesi di un sistema biologico e, opzionalmente, di generazione di un protocollo di coltura / Bardini, Roberta; Di Carlo, Stefano; Benso, Alfredo; Politano, Gianfranco. - (2019). | 1-gen-2019 | Bardini, RobertaDi Carlo, StefanoBenso, AlfredoPolitano, Gianfranco | - |
| Computational Tools for Applying Multi-level Models to Synthetic Biology / Bardini, R.; Politano, G.; Benso, A.; Di Carlo, S. - In: Synthetic Biology: Omics Tools and Their Applications / S. Singh. - STAMPA. - Singapore : Springer, 2018. - ISBN 978-981-10-8692-2. - pp. 95-112 [10.1007/978-981-10-8693-9_7] | 1-gen-2018 | R. BardiniG. PolitanoA. BensoS. Di Carlo | - |
| Modeling antibiotic resistance in the microbiota using Multi-level Petri Nets / Bardini, Roberta; DI CARLO, Stefano; Politano, GIANFRANCO MICHELE MARIA; Benso, Alfredo. - In: BMC SYSTEMS BIOLOGY. - ISSN 1752-0509. - ELETTRONICO. - 12:6(2018), pp. 1-21. [10.1186/s12918-018-0627-1] | 1-gen-2018 | Roberta BardiniStefano Di CarloGianfranco PolitanoAlfredo Benso | s12918-018-0627-1.pdf |
| Modeling biological complexity using Biology System Description Language (BiSDL) / Muggianu, Flavia; Benso, A.; Bardini, R.; Hu, E.; Politano, G.; Carlo, S. Di. - STAMPA. - (2018), pp. 713-717. (Intervento presentato al convegno IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018 tenutosi a Madrid, Spain nel 3-6 Dec. 2018) [10.1109/BIBM.2018.8621533]. | 1-gen-2018 | MUGGIANU, FLAVIABenso, A.Bardini, R.Politano, G.Carlo, S. Di + | PID5654585.pdf |