Archivio Istituzionale della RicercaBARDINI, ROBERTA
BARDINI, ROBERTA
Dipartimento di Automatica e Informatica
039474
Editorial: Unraveling GI cancer heterogeneity through single-cell multi-omics approaches
2026 Jansen, Rick J.; Bardini, Roberta; Grassi, Elena
Integrative Comparison of GeneHancer and Single-Cell Co-Accessibility Reveals Active Enhancer–Gene Interactions
2026 Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano
Use of bio-loggers to assess heat stress in Piedmontese cows under different stocking densities
2026 Manenti, Isabella; Perona, Giovanni; Di Carlo, Stefano; Bardini, Roberta; Martini, Lorenzo; Leclercq, Alessia; Abecia, Jose Alfonso; Bjarnason, Asgeir; Miretti, Silvia; Cornale, Paolo
From sketch to landscape: Transforming neuronal concepts across technological change
2025 Bardini, Roberta
Spike Train Scalograms (STS): a Deep Learning Classification Pipeline for Neuronal Cell Types
2025 Amprimo, Gianluca; Martini, Lorenzo; Bilir, Begum; Bardini, Roberta; Savino, Alessandro; Olmo, Gabriella; Di Carlo, Stefano
Start & Stop: a PhysiCell and PhysiBoSS 2.0 add-on for interactive simulation control
2025 Smeriglio, Riccardo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano
A methodology combining reinforcement learning and simulation to optimize the in silico culture of epithelial sheets
2024 Castrignanò, Alberto; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano
Biology System Description Language (BiSDL): a modeling language for the design of multicellular synthetic biological systems
2024 Giannantoni, Leonardo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano
Computational methods for biofabrication in tissue engineering and regenerative medicine - a literature review
2024 Bardini, Roberta; Di Carlo, Stefano
Cross-omic Transcription Factors meta-analysis: an insight on TFs accessibility and expression correlation
2024 Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano
Fast and Accurate LSTM Meta-modeling of TNF-induced Tumor Resistance In Vitro
2024 Abrate, Marco P; Smeriglio, Riccardo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano
Knowledge-generation Platform For Unravelling Bone Regeneration Mechanisms Induced By Biophysical Stimuli
2024 Gabetti, S; Daou, F; Masante, B; Scatena, E; Zenobi, E; Sanginario, A; Israel, S; Canova, A; Bardini, R; Benso, A; Rimondini, L; Bignardi, C; Cochis, A; Massai, D
Neuronal Spike Shapes (NSS): A straightforward approach to investigate heterogeneity in neuronal excitability states
2024 Martini, Lorenzo; Amprimo, Gianluca; Di Carlo, Stefano; Olmo, Gabriella; Ferraris, Claudia; Savino, Alessandro; Bardini, Roberta
Security Layers and Related Services within the Horizon Europe NEUROPULS Project
2024 Pavanello, Fabio; Marchand, Cedric; Jimenez, Paul; Letartre, Xavier; Chaves, Ricardo; Marastoni, Niccolò; Lovato, Alberto; Ceccato, Mariano; Papadimitriou, George; Karakostas, Vasileios; Gizopoulos, Dimitris; Bardini, Roberta; Carmona, Tzamn Melendez; Di Carlo, Stefano; Savino, Alessandro; Lerch, Laurence; Ruhrmair, Ulrich; Gutiérrez, Sergio Vinagrero; Di Natale, Giorgio; Vatajelu, Elena Ioana
GAGAM v1.2: An Improvement on Peak Labeling and Genomic Annotated Gene Activity Matrix Construction
2023 Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; DI CARLO, Stefano
GRAIGH: Gene Regulation accessibility integrating GeneHancer database
2023 Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano
Meta-analysis of Gene Activity (MAGA) Contributions and Correlation with Gene Expression, Through GAGAM
2023 Martini, L.; Bardini, R.; Savino, A.; Di Carlo, S.
A Methodology for Co-simulation-Based Optimization of Biofabrication Protocols
2022 Giannantoni, L; Bardini, R; Di Carlo, S
GAGAM: A Genomic Annotation-Based Enrichment of scATAC-seq Data for Gene Activity Matrix
2022 Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; DI CARLO, Stefano
High-resolution sample size enrichment of single-cell multi-modal low-throughput Patch-seq datasets
2022 Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano
| Citazione | Data di pubblicazione | Autori | File |
|---|---|---|---|
| Editorial: Unraveling GI cancer heterogeneity through single-cell multi-omics approaches / Jansen, Rick J.; Bardini, Roberta; Grassi, Elena. - In: FRONTIERS IN GENETICS. - ISSN 1664-8021. - ELETTRONICO. - 17:1869790(2026), pp. 1-3. [10.3389/fgene.2026.1869790] | 1-gen-2026 | Roberta Bardini + | fgene-17-1869790.pdf |
| Integrative Comparison of GeneHancer and Single-Cell Co-Accessibility Reveals Active Enhancer–Gene Interactions / Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano. - (2026), pp. 551-560. ( 19th International Joint Conference on Biomedical Engineering Systems and Technologies) [10.5220/0014631000004070]. | 1-gen-2026 | Martini, LorenzoBardini, RobertaSavino, AlessandroDi Carlo, Stefano | - |
| Use of bio-loggers to assess heat stress in Piedmontese cows under different stocking densities / Manenti, Isabella; Perona, Giovanni; Di Carlo, Stefano; Bardini, Roberta; Martini, Lorenzo; Leclercq, Alessia; Abecia, Jose Alfonso; Bjarnason, Asgeir; Miretti, Silvia; Cornale, Paolo. - ELETTRONICO. - Book of Abstracts:(2026), pp. 46-46. ( 2026 IEEE International Workshop on Measurements and Applications in Veterinary and Animal Sciences Padova 28-30 Aprile 2026) [10.5281/zenodo.20380467]. | 1-gen-2026 | Di Carlo, StefanoBardini, RobertaMartini, LorenzoLeclercq, Alessia + | - |
| From sketch to landscape: Transforming neuronal concepts across technological change / Bardini, Roberta - In: Systems Biology and In-Depth Applications for Unlocking Diseases / Sokouti, B.. - ELETTRONICO. - [s.l] : Elsevier - Academic Press, 2025. - ISBN 9780443223266. - pp. 37-52 [10.1016/b978-0-443-22326-6.00004-3] | 1-gen-2025 | Bardini, Roberta | SOKOUTI_9780443223273.pdf |
| Spike Train Scalograms (STS): a Deep Learning Classification Pipeline for Neuronal Cell Types / Amprimo, G., Martini, L., Bilir, B., Bardini, R., Savino, A., Olmo, G., Di Carlo, S.. - ELETTRONICO. - 2025:(2025), pp. 1-7. (2025 47th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) Copenhagen (DNK) 14-18 July 2025) [10.1109/embc58623.2025.11252661]. | 1-gen-2025 | Amprimo, GianlucaMartini, LorenzoBardini, RobertaSavino, AlessandroOlmo, GabriellaDi Carlo, Stefano + | Spike_Train_Scalograms_STS_a_Deep_Learning_Classification_Pipeline_for_Neuronal_Cell_Types.pdf; Spike_Train_Scalograms_STS.pdf |
| Start & Stop: a PhysiCell and PhysiBoSS 2.0 add-on for interactive simulation control / Smeriglio, R., Bardini, R., Savino, A., Di Carlo, S.. - In: BMC BIOINFORMATICS. - ISSN 1471-2105. - ELETTRONICO. - 26:(2025). [10.1186/s12859-025-06144-x] | 1-gen-2025 | Smeriglio, RiccardoBardini, RobertaSavino, AlessandroDi Carlo, Stefano | public_version.pdf |
| A methodology combining reinforcement learning and simulation to optimize the in silico culture of epithelial sheets / Castrignanò, Alberto; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano. - In: JOURNAL OF COMPUTATIONAL SCIENCE. - ISSN 1877-7503. - ELETTRONICO. - 76:(2024), pp. 1-20. [10.1016/j.jocs.2024.102226] | 1-gen-2024 | Bardini, RobertaSavino, AlessandroDi Carlo, Stefano + | 1-s2.0-S187775032400019X-main (1).pdf |
| Biology System Description Language (BiSDL): a modeling language for the design of multicellular synthetic biological systems / Giannantoni, L., Bardini, R., Savino, A., Di Carlo, S.. - In: BMC BIOINFORMATICS. - ISSN 1471-2105. - ELETTRONICO. - 25:1(2024), pp. 1-33. [10.1186/s12859-024-05782-x] | 1-gen-2024 | Giannantoni, LeonardoBardini, RobertaSavino, AlessandroDi Carlo, Stefano | s12859-024-05782-x.pdf; 12859_2024_5782_MOESM1_ESM.pdf |
| Computational methods for biofabrication in tissue engineering and regenerative medicine - a literature review / Bardini, Roberta; Di Carlo, Stefano. - In: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. - ISSN 2001-0370. - STAMPA. - 23:(2024), pp. 601-616. [10.1016/j.csbj.2023.12.035] | 1-gen-2024 | Bardini, RobertaDi Carlo, Stefano | PIIS2001037023005111.pdf |
| Cross-omic Transcription Factors meta-analysis: an insight on TFs accessibility and expression correlation / Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano. - In: GENES. - ISSN 2073-4425. - ELETTRONICO. - 15:3(2024), pp. 1-16. [10.3390/genes15030268] | 1-gen-2024 | Martini, LorenzoBardini, RobertaSavino, AlessandroDi Carlo, Stefano | genes-15-00268.pdf |
| Fast and Accurate LSTM Meta-modeling of TNF-induced Tumor Resistance In Vitro / Abrate, Marco P; Smeriglio, Riccardo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano. - ELETTRONICO. - (2024), pp. 6194-6201. ( 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Lisbon (PRT) 03-06 December 2024) [10.1109/BIBM62325.2024.10822769]. | 1-gen-2024 | Abrate, Marco PSmeriglio, RiccardoBardini, RobertaSavino, AlessandroDi Carlo, Stefano | Fast_and_Accurate_LSTM_Meta-modeling_of_TNF-induced_Tumor_Resistance_In_Vitro.pdf; Paper___BIBM_2024__.pdf |
| Knowledge-generation Platform For Unravelling Bone Regeneration Mechanisms Induced By Biophysical Stimuli / Gabetti, S; Daou, F; Masante, B; Scatena, E; Zenobi, E; Sanginario, A; Israel, S; Canova, A; Bardini, R; Benso, A; Rimondini, L; Bignardi, C; Cochis, A; Massai, D. - In: TISSUE ENGINEERING, PART A. - ISSN 1937-3341. - 30:15-16(2024), pp. S35-S35. | 1-gen-2024 | Gabetti, SMasante, BSanginario, AIsrael, SCanova, ABardini, RBenso, ABignardi, CMassai, D + | AbstractTERMIS_BIGMECH.pdf |
| Neuronal Spike Shapes (NSS): A straightforward approach to investigate heterogeneity in neuronal excitability states / Martini, L., Amprimo, G., Di Carlo, S., Olmo, G., Ferraris, C., Savino, A., Bardini, R.. - In: COMPUTERS IN BIOLOGY AND MEDICINE. - ISSN 0010-4825. - ELETTRONICO. - 168:(2024), pp. 1-15. [10.1016/j.compbiomed.2023.107783] | 1-gen-2024 | Martini, LorenzoAmprimo, GianlucaDi Carlo, StefanoOlmo, GabriellaSavino, AlessandroBardini, Roberta + | 1-s2.0-S0010482523012489-main.pdf |
| Security Layers and Related Services within the Horizon Europe NEUROPULS Project / Pavanello, F., Marchand, C., Jimenez, P., Letartre, X., Chaves, R., Marastoni, N., Lovato, A., Ceccato, M., Papadimitriou, G., Karakostas, V., Gizopoulos, D., Bardini, R., Carmona, T.M., Di Carlo, S., Savino, A., Lerch, L., Ruhrmair, U., Gutiérrez, S.V., Di Natale, G., Vatajelu, E.I.. - ELETTRONICO. - (2024), pp. 1-6. (2024 Design, Automation & Test in Europe Conference & Exhibition (DATE) Valencia (ESP) 25-27 March 2024) [10.23919/date58400.2024.10546706]. | 1-gen-2024 | Bardini, RobertaCarmona, Tzamn MelendezDi Carlo, StefanoSavino, Alessandro + | Security_Layers_and_Related_Services_within_the_Horizon_Europe_NEUROPULS_Project.pdf; DATE2024-Neuropuls.pdf |
| GAGAM v1.2: An Improvement on Peak Labeling and Genomic Annotated Gene Activity Matrix Construction / Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; DI CARLO, Stefano. - In: GENES. - ISSN 2073-4425. - ELETTRONICO. - 14:1(2023). [10.3390/genes14010115] | 1-gen-2023 | Lorenzo MartiniRoberta BardiniAlessandro SavinoStefano Di Carlo | genes-14-00115.pdf |
| GRAIGH: Gene Regulation accessibility integrating GeneHancer database / Martini, L., Bardini, R., Savino, A., Di Carlo, S.. - ELETTRONICO. - (2023), pp. 343-348. (2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Istanbul (Turkey) Dec. 5-8, 2023) [10.1109/BIBM58861.2023.10385417]. | 1-gen-2023 | Martini, LorenzoBardini, RobertaSavino, AlessandroDi Carlo, Stefano | GRAIGH_Gene_Regulation_accessibility_integrating_GeneHancer_database.pdf; Paper___BIBM_2023___GRAIGH (3).pdf |
| Meta-analysis of Gene Activity (MAGA) Contributions and Correlation with Gene Expression, Through GAGAM / Martini, L., Bardini, R., Savino, A., Di Carlo, S.. - ELETTRONICO. - 13920:(2023), pp. 193-207. (10th International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2023) Meloneras, Gran Canaria (ESP) 12-14 July 2023) [10.1007/978-3-031-34960-7_14]. | 1-gen-2023 | Martini L.Bardini R.Savino A.Di Carlo S. | 978-3-031-34960-7_14.pdf; IWBBIO23-MAGA.pdf |
| A Methodology for Co-simulation-Based Optimization of Biofabrication Protocols / Giannantoni, L; Bardini, R; Di Carlo, S. - ELETTRONICO. - 13347:(2022), pp. 179-192. ( International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO) 2022 Gran Canaria Jun. 27-30, 2022) [10.1007/978-3-031-07802-6_16]. | 1-gen-2022 | Giannantoni LBardini RDi Carlo S | 2022.01.28.478198.full.pdf; 978-3-031-07802-6_16.pdf; paper_91.pdf |
| GAGAM: A Genomic Annotation-Based Enrichment of scATAC-seq Data for Gene Activity Matrix / Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; DI CARLO, Stefano. - ELETTRONICO. - 13347:(2022), pp. 18-32. ( International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO) 2022 Gran Canaria Jun. 27-30, 2022) [10.1007/978-3-031-07802-6_2]. | 1-gen-2022 | Lorenzo MartiniRoberta BardiniAlessandro SavinoStefano Di Carlo | Martini2022_Chapter_GAGAMAGenomicAnnotation-BasedE.pdf; IWBBIO_2022___Single_Cell (2).pdf |
| High-resolution sample size enrichment of single-cell multi-modal low-throughput Patch-seq datasets / Martini, Lorenzo; Bardini, Roberta; Savino, Alessandro; Di Carlo, Stefano. - ELETTRONICO. - (2022), pp. 2334-2341. ( 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Las Vegas (USA) Dec. 6-8, 2022) [10.1109/BIBM55620.2022.9995529]. | 1-gen-2022 | Martini, LorenzoBardini, RobertaSavino, AlessandroDi Carlo, Stefano | High-resolution_sample_size_enrichment_of_single-cell_multi-modal_low-throughput_Patch-seq_datasets.pdf; 2022___IEEE_BIBM___Number_cells_enrichment (1).pdf |