Archivio Istituzionale della RicercaBENSO, ALFREDO
BENSO, ALFREDO
Dipartimento di Automatica e Informatica
002904
Systems-level analysis predicts no autotrophy-linked protein-RNA interactions in Clostridium autoethanogenum
2026 Re, Angela; Politano, Gianfranco Michele Maria; Reinmets, Kristina; Benso, Alfredo; Girbal, Laurence; Cocaign-Bousquet, Muriel; Valgepea, Kaspar.
Artificial intelligence and machine learning heuristics for discovery of ncRNAs
2025 Benso, Alfredo; Politano, Gianfranco
Knowledge-generation Platform For Unravelling Bone Regeneration Mechanisms Induced By Biophysical Stimuli
2024 Gabetti, S; Daou, F; Masante, B; Scatena, E; Zenobi, E; Sanginario, A; Israel, S; Canova, A; Bardini, R; Benso, A; Rimondini, L; Bignardi, C; Cochis, A; Massai, D
PRONTO-TK: a user-friendly PROtein Neural neTwOrk tool-kit for accessible protein function prediction
2024 Politano, Gianfranco; Benso, Alfredo; Rehman, Hafeez Ur; Re, Angela
Application of Microsatellites to Trace the Dairy Products Back to the Farm of Origin
2023 Perga, Simona; Biolatti, Cristina; Martini, Isabella; Rossi, Francesco; Benso, Alfredo; Luigi Acutis, Pier; Bagnato, Alessandro; Cognata, Domenico; Caroggio, Piero; Peletto, Simone; Modesto, Paola
CapGAN: Text-to-Image Synthesis Using Capsule GANs
2023 Omar, Maryam; Ur Rehman, Hafeez; Bin Samin, Omar; Alazab, Moutaz; Politano, Gianfranco; Benso, Alfredo
Special Issue: New Advances in Bioinformatics and Biomedical Engineering Using Machine Learning Techniques, IWBBIO-2022
2023 Valenzuela, O.; Ortuno, F.; Benso, A.; Schwartz, J. -M.; de Brevern, A. G.; Rojas, I.
Gene Ontology GAN (GOGAN): a novel architecture for protein function prediction
2022 Mansoor, Musadaq; Nauman, Mohammad; Ur Rehman, Hafeez; Benso, Alfredo
Integrated systems genomic approaches for characterizing uncharacterized proteins
2022 Valadi, Jayaraman; Seshadri Sundararajan, Vijayaraghava; Reddy Bandapalli, Obul; Benso, Alfredo; Suravajhala, Prashanth
The integration of clinical data in the assessment of Multiple Sclerosis - a review
2022 Ostellino, Sofia; Benso, Alfredo; Politano, GIANFRANCO MICHELE MARIA
A New Approach Against Food Frauds: The Portable Near-Infrared Device for Fish Fillets Identification
2021 Sciuto, Simona; Esposito, Giovanna; Dell’Atti, Luana; Rossi, Francesco; Vittoria Riina, Maria; Merlo, Gabriele; Magnani, Luca; Benso, Alfredo; Maria Bozzetta and Pier Luigi Acutis, Elena
Determinants Associated With the Risk of Emergency Department Visits Among Patients Receiving Integrated Home Care Services: A 6-Year Retrospective Observational Study in a Large Italian Region
2021 Campagna, Sara; Borraccino, Alberto; Politano, Gianfranco; Benso, Alfredo; Dalmasso, Marco; Dimonte, Valerio; Gianino, Maria Michela
Nets-within-nets for modeling emergent patterns in ontogenetic processes
2021 Bardini, Roberta; Benso, Alfredo; Politano, Gianfranco; Di Carlo, Stefano
Severe and moderate seasonal influenza epidemics among Italian healthcare workers: A comparison of the excess of absenteeism
2021 Gianino, M. M.; Kakaa, O.; Politano, G.; Scarmozzino, A.; Benso, A.; Zotti, C. M.
IL6-mediated HCoV-host interactome regulatory network and GO/Pathway enrichment analysis
2020 Politano, G.; Benso, A.
Beyond Homology Transfer: Deep Learning for Automated Annotation of Proteins
2019 Nauman, Mohammad; Ur Rehman, Hafeez; Politano, Gianfranco; Benso, Alfredo
Cost of Sickness Absenteeism during Seasonal Influenza Outbreaks of Medium Intensity among Health Care Workers
2019 Gianino, Maria Michela; Politano, Gianfranco; Scarmozzino, Antonio; Stillo, Michela; Amprino, Viola; Di Carlo, Stefano; Benso, Alfredo; Zotti, Carla Maria
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
2019 Zhou, N.; Jiang, Y.; Bergquist, T. R.; Lee, A. J.; Kacsoh, B. Z.; Crocker, A. W.; Lewis, K. A.; Georghiou, G.; Nguyen, H. N.; Hamid, M. N.; Davis, L.; Dogan, T.; Atalay, V.; Rifaioglu, A. S.; Dalklran, A.; Cetin Atalay, R.; Zhang, C.; Hurto, R. L.; Freddolino, P. L.; Zhang, Y.; Bhat, P.; Supek, F.; Fernandez, J. M.; Gemovic, B.; Perovic, V. R.; Davidovic, R. S.; Sumonja, N.; Veljkovic, N.; Asgari, E.; Mofrad, M. R. K.; Profiti, G.; Savojardo, C.; Martelli, P. L.; Casadio, R.; Boecker, F.; Schoof, H.; Kahanda, I.; Thurlby, N.; Mchardy, A. C.; Renaux, A.; Saidi, R.; Gough, J.; Freitas, A. A.; Antczak, M.; Fabris, F.; Wass, M. N.; Hou, J.; Cheng, J.; Wang, Z.; Romero, A. E.; Paccanaro, A.; Yang, H.; Goldberg, T.; Zhao, C.; Holm, L.; Toronen, P.; Medlar, A. J.; Zosa, E.; Borukhov, I.; Novikov, I.; Wilkins, A.; Lichtarge, O.; Chi, P. -H.; Tseng, W. -C.; Linial, M.; Rose, P. W.; Dessimoz, C.; Vidulin, V.; Dzeroski, S.; Sillitoe, I.; Das, S.; Lees, J. G.; Jones, D. T.; Wan, C.; Cozzetto, D.; Fa, R.; Torres, M.; Warwick Vesztrocy, A.; Rodriguez, J. M.; Tress, M. L.; Frasca, M.; Notaro, M.; Grossi, G.; Petrini, A.; Re, M.; Valentini, G.; Mesiti, M.; Roche, D. B.; Reeb, J.; Ritchie, D. W.; Aridhi, S.; Alborzi, S. Z.; Devignes, M. -D.; Koo, D. C. E.; Bonneau, R.; Gligorijevic, V.; Barot, M.; Fang, H.; Toppo, S.; Lavezzo, E.; Falda, M.; Berselli, M.; Tosatto, S. C. E.; Carraro, M.; Piovesan, D.; Ur Rehman, H.; Mao, Q.; Zhang, S.; Vucetic, S.; Black, G. S.; Jo, D.; Suh, E.; Dayton, J. B.; Larsen, D. J.; Omdahl, A. R.; Mcguffin, L. J.; Brackenridge, D. A.; Babbitt, P. C.; Yunes, J. M.; Fontana, P.; Zhang, F.; Zhu, S.; You, R.; Zhang, Z.; Dai, S.; Yao, S.; Tian, W.; Cao, R.; Chandler, C.; Amezola, M.; Johnson, D.; Chang, J. -M.; Liao, W. -H.; Liu, Y. -W.; Pascarelli, S.; Frank, Y.; Hoehndorf, R.; Kulmanov, M.; Boudellioua, I.; Politano, G.; Di Carlo, S.; Benso, A.; Hakala, K.; Ginter, F.; Mehryary, F.; Kaewphan, S.; Bjorne, J.; Moen, H.; Tolvanen, M. E. E.; Salakoski, T.; Kihara, D.; Jain, A.; Smuc, T.; Altenhoff, A.; Ben-Hur, A.; Rost, B.; Brenner, S. E.; Orengo, C. A.; Jeffery, C. J.; Bosco, G.; Hogan, D. A.; Martin, M. J.; O'Donovan, C.; Mooney, S. D.; Greene, C. S.; Radivojac, P.; Friedberg, I.
‘One DB to rule them all’ - the RING: a Regulatory INteraction Graph combining TFs, genes/proteins, SNPs, diseases and drugs
2019 Politano, GIANFRANCO MICHELE MARIA; DI CARLO, Stefano; Benso, Alfredo
DNA Pool Analysis-based Forgery-Detection of Dairy Products
2018 Rossi, F.; Modesto, P.; Biolatti, C.; Benso, A.; Di Carlo, S.; Politano, G.; Acutis, P. L.
| Citazione | Data di pubblicazione | Autori | File |
|---|---|---|---|
| Systems-level analysis predicts no autotrophy-linked protein-RNA interactions in Clostridium autoethanogenum / Re, A., Politano, G.M.M., Reinmets, K., Benso, A., Girbal, L., Cocaign-Bousquet, M., Valgepea, Kaspar.. - In: NATURE COMMUNICATIONS. - ISSN 2041-1723. - (2026). | 1-gen-2026 | Re, AngelaPolitano, Gianfranco Michele MariaBenso, Alfredo + | Manuscript.pdf |
| Artificial intelligence and machine learning heuristics for discovery of ncRNAs / Benso, A., Politano, G.. - In: PROGRESS IN MOLECULAR BIOLOGY AND TRANSLATIONAL SCIENCE. - ISSN 1877-1173. - (2025). [10.1016/bs.pmbts.2025.01.002] | 1-gen-2025 | Benso, AlfredoPolitano, Gianfranco | 1-s2.0-S187711732500002X-main.pdf |
| Knowledge-generation Platform For Unravelling Bone Regeneration Mechanisms Induced By Biophysical Stimuli / Gabetti, S., Daou, F., Masante, B., Scatena, E., Zenobi, E., Sanginario, A., Israel, S., Canova, A., Bardini, R., Benso, A., Rimondini, L., Bignardi, C., Cochis, A., Massai, D.. - In: TISSUE ENGINEERING, PART A. - ISSN 1937-3341. - 30:15-16(2024), pp. S35-S35. | 1-gen-2024 | Gabetti, SMasante, BSanginario, AIsrael, SCanova, ABardini, RBenso, ABignardi, CMassai, D + | AbstractTERMIS_BIGMECH.pdf |
| PRONTO-TK: a user-friendly PROtein Neural neTwOrk tool-kit for accessible protein function prediction / Politano, G., Benso, A., Rehman, H.U., Re, A.. - In: NAR GENOMICS AND BIOINFORMATICS. - ISSN 2631-9268. - 6:3(2024). [10.1093/nargab/lqae112] | 1-gen-2024 | Politano, GianfrancoBenso, AlfredoRe, Angela + | lqae112.pdf |
| Application of Microsatellites to Trace the Dairy Products Back to the Farm of Origin / Perga, S., Biolatti, C., Martini, I., Rossi, F., Benso, A., Luigi Acutis, P., Bagnato, A., Cognata, D., Caroggio, P., Peletto, S., Modesto, P.. - In: FOODS. - ISSN 2304-8158. - 12:22(2023). [10.3390/foods12224131] | 1-gen-2023 | Francesco RossiAlfredo Benso + | foods-12-04131.pdf |
| CapGAN: Text-to-Image Synthesis Using Capsule GANs / Omar, M., Ur Rehman, H., Bin Samin, O., Alazab, M., Politano, G., Benso, A.. - In: INFORMATION. - ISSN 2078-2489. - 14:10(2023). [10.3390/info14100552] | 1-gen-2023 | Gianfranco PolitanoAlfredo Benso + | information-14-00552.pdf |
| Special Issue: New Advances in Bioinformatics and Biomedical Engineering Using Machine Learning Techniques, IWBBIO-2022 / Valenzuela, O., Ortuno, F., Benso, A., Schwartz, J.-M., de Brevern, A.G., Rojas, I.. - In: GENES. - ISSN 2073-4425. - 14:8(2023), p. 1574. [10.3390/genes14081574] | 1-gen-2023 | Benso A. + | genes-14-01574.pdf |
| Gene Ontology GAN (GOGAN): a novel architecture for protein function prediction / Mansoor, M., Nauman, M., Ur Rehman, H., Benso, A.. - In: SOFT COMPUTING. - ISSN 1432-7643. - ELETTRONICO. - (2022). [10.1007/s00500-021-06707-z] | 1-gen-2022 | Benso, Alfredo + | Mansoor2022_Article_GeneOntologyGANGOGANANovelArch.pdf |
| Integrated systems genomic approaches for characterizing uncharacterized proteins / Valadi, J., Seshadri Sundararajan, V., Reddy Bandapalli, O., Benso, A., Suravajhala, P.. - In: FRONTIERS IN GENETICS. - ISSN 1664-8021. - ELETTRONICO. - (2022). [10.3389/fgene.2022.1000825] | 1-gen-2022 | Alfredo Benso + | fgene-13-1000825.pdf |
| The integration of clinical data in the assessment of Multiple Sclerosis - a review / Ostellino, S., Benso, A., Politano, G.M.M.. - In: COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE. - ISSN 0169-2607. - ELETTRONICO. - 221:(2022), p. 106900. [10.1016/j.cmpb.2022.106900] | 1-gen-2022 | Sofia OstellinoAlfredo BensoGianfranco Politano | 1-s2.0-S0169260722002826-main.pdf; Review_CMPB.pdf |
| A New Approach Against Food Frauds: The Portable Near-Infrared Device for Fish Fillets Identification / Sciuto, S., Esposito, G., Dell’Atti, L., Rossi, F., Vittoria Riina, M., Merlo, G., Magnani, L., Benso, A., Maria Bozzetta and Pier Luigi Acutis, E.. - In: SCHOLARLY JOURNAL OF FOOD AND NUTRITION. - ISSN 2638-6070. - 4:1(2021), pp. 442-447. [10.32474/SJFN.2021.04.000177] | 1-gen-2021 | Francesco RossiAlfredo Benso + | articolo SCiO.pdf |
| Determinants Associated With the Risk of Emergency Department Visits Among Patients Receiving Integrated Home Care Services: A 6-Year Retrospective Observational Study in a Large Italian Region / Campagna, S., Borraccino, A., Politano, G., Benso, A., Dalmasso, M., Dimonte, V., Gianino, M.M.. - In: INTERNATIONAL JOURNAL OF HEALTH POLICY AND MANAGEMENT. - ISSN 2322-5939. - ELETTRONICO. - 10:10(2021), pp. 605-612. [10.34172/ijhpm.2020.79] | 1-gen-2021 | Politano, GianfrancoBenso, Alfredo + | IJHPM_Volume 10_Issue 10_Pages 605-612.pdf |
| Nets-within-nets for modeling emergent patterns in ontogenetic processes / Bardini, R., Benso, A., Politano, G., Di Carlo, S.. - In: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. - ISSN 2001-0370. - ELETTRONICO. - 19:(2021), pp. 5701-5721. [10.1016/j.csbj.2021.10.008] | 1-gen-2021 | Bardini, RobertaBenso, AlfredoPolitano, GianfrancoDi Carlo, Stefano | NWN_CElegans.pdf; 1-s2.0-S200103702100430X-main.pdf |
| Severe and moderate seasonal influenza epidemics among Italian healthcare workers: A comparison of the excess of absenteeism / Gianino, M.M., Kakaa, O., Politano, G., Scarmozzino, A., Benso, A., Zotti, C.M.. - In: INFLUENZA AND OTHER RESPIRATORY VIRUSES. - ISSN 1750-2640. - 15:1(2021), pp. 81-90. [10.1111/irv.12777] | 1-gen-2021 | Politano G.Benso A. + | Influenza Resp Viruses - 2020 - Gianino - Severe and moderate seasonal influenza epidemics among Italian healthcare workers.pdf |
| IL6-mediated HCoV-host interactome regulatory network and GO/Pathway enrichment analysis / Politano, G., Benso, A.. - In: PLOS COMPUTATIONAL BIOLOGY. - ISSN 1553-734X. - 16:9 (e1008238)(2020). [10.1371/journal.pcbi.1008238] | 1-gen-2020 | Politano G.Benso A. | journal.pcbi.1008238.pdf |
| Beyond Homology Transfer: Deep Learning for Automated Annotation of Proteins / Nauman, M., Ur Rehman, H., Politano, G., Benso, A.. - In: JOURNAL OF GRID COMPUTING. - ISSN 1570-7873. - STAMPA. - 17:(2019), pp. 225-237. [10.1007/s10723-018-9450-6] | 1-gen-2019 | Ur Rehman, HafeezPolitano, GianfrancoBenso, Alfredo + | Nauman2019_Article_BeyondHomologyTransferDeepLear.pdf |
| Cost of Sickness Absenteeism during Seasonal Influenza Outbreaks of Medium Intensity among Health Care Workers / Gianino, M.M., Politano, G., Scarmozzino, A., Stillo, M., Amprino, V., Di Carlo, S., Benso, A., Zotti, C.M.. - In: INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH. - ISSN 1661-7827. - ELETTRONICO. - 16:5(2019), pp. 747-757. [10.3390/ijerph16050747] | 1-gen-2019 | Politano, GianfrancoDi Carlo, StefanoBenso, Alfredo + | ijerph-16-00747.pdf |
| The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens / Zhou, N., Jiang, Y., Bergquist, T.R., Lee, A.J., Kacsoh, B.Z., Crocker, A.W., Lewis, K.A., Georghiou, G., Nguyen, H.N., Hamid, M.N., Davis, L., Dogan, T., Atalay, V., Rifaioglu, A.S., Dalklran, A., Cetin Atalay, R., Zhang, C., Hurto, R.L., Freddolino, P.L., Zhang, Y., et al.. - In: GENOME BIOLOGY. - ISSN 1474-760X. - ELETTRONICO. - 20:Article number: 244 (2019)(2019), pp. 1-23. [10.1186/s13059-019-1835-8] | 1-gen-2019 | Politano G.Di Carlo S.Benso A. + | s13059-019-1835-8.pdf |
| ‘One DB to rule them all’ - the RING: a Regulatory INteraction Graph combining TFs, genes/proteins, SNPs, diseases and drugs / Politano, G.M.M., DI CARLO, S., Benso, A.. - In: DATABASE. - ISSN 1758-0463. - ELETTRONICO. - 2019:baz108(2019), pp. 1-14. [10.1093/database/baz108] | 1-gen-2019 | Gianfranco PolitanoStefano Di CarloAlfredo Benso | baz108.pdf; baz108_small.pdf |
| DNA Pool Analysis-based Forgery-Detection of Dairy Products / Rossi, F., Modesto, P., Biolatti, C., Benso, A., Di Carlo, S., Politano, G., Acutis, P.L.. - In: INTERNATIONAL JOURNAL OF ELECTRICAL AND COMPUTER ENGINEERING. - ISSN 2088-8708. - STAMPA. - 8:5(2018), pp. 3913-3922. [10.11591/ijece.v8i6] | 1-gen-2018 | Rossi F.Benso A.Di Carlo S.Politano G. + | document.pdf |