Sfoglia per Autore
Protein alignment HW/SW optimizations
2012 Urgese, Gianvito; Graziano, Mariagrazia; Vacca, Marco; Awais, Muhammad; Frache, Stefano; Zamboni, Maurizio
NanoMagnet Logic: an Architectural Level Overview
2014 Vacca, Marco; Graziano, Mariagrazia; Wang, JUAN CHI; Cairo, Fabrizio; Causapruno, Giovanni; Urgese, Gianvito; Biroli, ANDREA DARIO GIANCARLO; Zamboni, Maurizio
miR-SEA: miRNA Seed Extension based Aligner Pipeline for NGS Expression Level Extraction
2014 Urgese, Gianvito; Paciello, Giulia; Isella, C.; Medico, E.; Macii, Enrico; Ficarra, Elisa; Acquaviva, Andrea
Dynamic Gap Selector: A Smith Waterman Sequence Alignment Algorithm with Affine Gap Model Optimisation
2014 Urgese, Gianvito; Paciello, Giulia; Acquaviva, Andrea; Ficarra, Elisa; Graziano, Mariagrazia; Zamboni, Maurizio
Top-down profiling methodology and new Partition and Placement tool to improve Spiking Neural Network simulations on a massively many-core neuromorphic platform
2015 Urgese, Gianvito; Barchi, Francesco; Macii, Enrico; Acquaviva, Andrea
On the relevance of a complete characterisation of miRNAs, isomiRs and miRNA-mRNA interaction sites through miRNA-specific alignment tools
2015 Urgese, Gianvito; Paciello, Giulia; Ficarra, Elisa; Macii, Enrico; Acquaviva, Andrea
Protein Alignment Systolic Array Throughput Optimization
2015 Causapruno, Giovanni; Urgese, Gianvito; Vacca, Marco; Graziano, Mariagrazia; Zamboni, Maurizio
Top-Down Profiling of Application Specific Many-core Neuromorphic Platforms
2015 Urgese, Gianvito; Barchi, Francesco; Macii, Enrico
Computational Methods for Bioinformatics Analysis and Neuromorphic Computing
2016 Urgese, Gianvito
isomiR-SEA: An RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation
2016 Urgese, Gianvito; Paciello, Giulia; Acquaviva, Andrea; Ficarra, Elisa
Toolchain integration of runtime variability and aging awareness in multicore platforms
2016 Nittala, VENKATA RAMAKRISHNA; Barchi, Francesco; Urgese, Gianvito; Acquaviva, Andrea
Data and Commands Communication Protocol for Neuromorphic Platform Configuration
2016 Siino, Alessandro; Barchi, Francesco; Davies, Sergio; Urgese, Gianvito; Acquaviva, Andrea
isomiR-SEA: miRNA and isomiR expression level detection in seven RNA-Seq datasets
2017 Urgese, Gianvito; Paciello, Giulia; Macii, Enrico; Acquaviva, Andrea; Ficarra, Elisa
A Convolutional Neural Network Fully Implemented on FPGA for Embedded Platforms
2017 Bettoni, Marco; Urgese, Gianvito; Kobayashi, Yuki; Macii, Enrico; Acquaviva, Andrea
An Efficient MPI Implementation for Multi-Core Neuromorphic Platforms
2017 Barchi, Francesco; Urgese, Gianvito; Macii, Enrico; Acquaviva, Andrea
The SeqAn C++ template library for efficient sequence analysis: A resource for programmers
2017 Reinert, Knut; Dadi, Temesgen Hailemariam; Ehrhardt, Marcel; Hauswedell, Hannes; Mehringer, Svenja; Rahn, René; Kim, Jongkyu; Pockrandt, Christopher; Winkler, Jorg; Siragusa, Enrico; Urgese, Gianvito; Weese, David
Work-in-Progress: Multiple Alignment of Packet Sequences for Efficient Communication in a Many-Core Neuromorphic System
2018 Urgese, Gianvito; Peres, Luca; Barchi, Francesco; Macii, Enrico; Acquaviva, Andrea
Directed Graph Placement for SNN simulation into a multi-core GALS architecture
2018 Barchi, Francesco; Urgese, Gianvito; Acquaviva, Andrea; Macii, Enrico
A Parallel Hardware Architecture For Quantum Annealing Algorithm Acceleration
2018 Forno, Evelina; Acquaviva, Andrea; Yuki, Kobayashi; Macii, Enrico; Urgese, Gianvito
Optimizing Network Traffic for Spiking Neural Network Simulations on Densely Interconnected Many-Core Neuromorphic Platforms
2018 Urgese, Gianvito; Barchi, Francesco; Macii, Enrico; Acquaviva, Andrea
Citazione | Data di pubblicazione | Autori | File |
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Protein alignment HW/SW optimizations / Urgese, Gianvito; Graziano, Mariagrazia; Vacca, Marco; Awais, Muhammad; Frache, Stefano; Zamboni, Maurizio. - STAMPA. - (2012), pp. 145-148. (Intervento presentato al convegno Electronics, Circuits and Systems (ICECS), 2012 19th IEEE International Conference on tenutosi a Seville, Spain nel 2012) [10.1109/ICECS.2012.6463779]. | 1-gen-2012 | URGESE, GIANVITOGRAZIANO, MARIAGRAZIAVACCA, MARCOAWAIS, MUHAMMADFRACHE, STEFANOZAMBONI, Maurizio | alignement-preprint.pdf |
NanoMagnet Logic: an Architectural Level Overview / Vacca, Marco; Graziano, Mariagrazia; Wang, JUAN CHI; Cairo, Fabrizio; Causapruno, Giovanni; Urgese, Gianvito; Biroli, ANDREA DARIO GIANCARLO; Zamboni, Maurizio (LECTURE NOTES IN COMPUTER SCIENCE). - In: Field Coupled NanocomputingSTAMPA. - Berlin : Springer, 2014. - ISBN 978-3-662-43722-3. - pp. 223-256 [10.1007/978-3-662-43722-3 10] | 1-gen-2014 | VACCA, MARCOGRAZIANO, MARIAGRAZIAWANG, JUAN CHICAIRO, FABRIZIOCAUSAPRUNO, GIOVANNIURGESE, GIANVITOBIROLI, ANDREA DARIO GIANCARLOZAMBONI, Maurizio | FCN-graziano-archi.pdf; FCN-archi.pdf |
miR-SEA: miRNA Seed Extension based Aligner Pipeline for NGS Expression Level Extraction / Urgese, Gianvito; Paciello, Giulia; Isella, C.; Medico, E.; Macii, Enrico; Ficarra, Elisa; Acquaviva, Andrea. - STAMPA. - 2:(2014), pp. 1015-1026. (Intervento presentato al convegno 2nd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2014) tenutosi a Granada nel April 7-9 2014). | 1-gen-2014 | URGESE, GIANVITOPACIELLO, GIULIAMACII, EnricoFICARRA, ELISAACQUAVIVA, ANDREA + | IWBBIO_2014_paper_105.pdf |
Dynamic Gap Selector: A Smith Waterman Sequence Alignment Algorithm with Affine Gap Model Optimisation / Urgese, Gianvito; Paciello, Giulia; Acquaviva, Andrea; Ficarra, Elisa; Graziano, Mariagrazia; Zamboni, Maurizio. - STAMPA. - 2:(2014), pp. 1347-1358. (Intervento presentato al convegno 2nd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2014) tenutosi a Granada nel April 7-9 2014). | 1-gen-2014 | URGESE, GIANVITOPACIELLO, GIULIAACQUAVIVA, ANDREAFICARRA, ELISAGRAZIANO, MARIAGRAZIAZAMBONI, Maurizio | IWBBIO_2014_paper_143.pdf |
Top-down profiling methodology and new Partition and Placement tool to improve Spiking Neural Network simulations on a massively many-core neuromorphic platform / Urgese, Gianvito; Barchi, Francesco; Macii, Enrico; Acquaviva, Andrea. - ELETTRONICO. - (2015). (Intervento presentato al convegno 10th SICC International Tutorial Workshop "Topics in nonlinear dynamics". Nonlinear Dynamics in Computational Neuroscience: from Physics and Biology to ICT tenutosi a Turin (IT) nel September 7-9, 2015). | 1-gen-2015 | URGESE, GIANVITOBARCHI, FRANCESCOMACII, EnricoACQUAVIVA, ANDREA | Abstract_Urgese_v3.pdf |
On the relevance of a complete characterisation of miRNAs, isomiRs and miRNA-mRNA interaction sites through miRNA-specific alignment tools / Urgese, Gianvito; Paciello, Giulia; Ficarra, Elisa; Macii, Enrico; Acquaviva, Andrea. - ELETTRONICO. - (2015). (Intervento presentato al convegno RNAi 2015: Short & Long Non-coding RNAs, 10th International Conference & Exhibition tenutosi a Oxford (UK) nel 24-26 March 2015). | 1-gen-2015 | URGESE, GIANVITOPACIELLO, GIULIAFICARRA, ELISAMACII, EnricoACQUAVIVA, ANDREA | Urgese-RNAi15_2.pdf |
Protein Alignment Systolic Array Throughput Optimization / Causapruno, Giovanni; Urgese, Gianvito; Vacca, Marco; Graziano, Mariagrazia; Zamboni, Maurizio. - In: IEEE TRANSACTIONS ON VERY LARGE SCALE INTEGRATION (VLSI) SYSTEMS. - ISSN 1063-8210. - STAMPA. - 23:1(2015), pp. 68-77. [10.1109/TVLSI.2014.2302015] | 1-gen-2015 | CAUSAPRUNO, GIOVANNIURGESE, GIANVITOVACCA, MARCOGRAZIANO, MARIAGRAZIAZAMBONI, Maurizio | TVLSI-protein-alignement.pdf; TVLSI-protein-alignement.pdf |
Top-Down Profiling of Application Specific Many-core Neuromorphic Platforms / Urgese, Gianvito; Barchi, Francesco; Macii, Enrico. - ELETTRONICO. - (2015), pp. 127-134. (Intervento presentato al convegno IEEE 9th International Symposium on Embedded Multicore/Many-core Systems-on-Chip (MCSoC-15) tenutosi a Turin (IT) nel September 23-25, 2015) [10.1109/MCSoC.2015.43]. | 1-gen-2015 | URGESE, GIANVITOBARCHI, FRANCESCOMACII, Enrico | Urgese_MCSoC_2015.pdf |
Computational Methods for Bioinformatics Analysis and Neuromorphic Computing / Urgese, Gianvito. - (2016). | 1-gen-2016 | URGESE, GIANVITO | - |
isomiR-SEA: An RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation / Urgese, Gianvito; Paciello, Giulia; Acquaviva, Andrea; Ficarra, Elisa. - In: BMC BIOINFORMATICS. - ISSN 1471-2105. - ELETTRONICO. - 17:148(2016). [10.1186/s12859-016-0958-0] | 1-gen-2016 | URGESE, GIANVITOPACIELLO, GIULIAACQUAVIVA, ANDREAFICARRA, ELISA | s12859-016-0958-0.pdf |
Toolchain integration of runtime variability and aging awareness in multicore platforms / Nittala, VENKATA RAMAKRISHNA; Barchi, Francesco; Urgese, Gianvito; Acquaviva, Andrea. - ELETTRONICO. - (2016). (Intervento presentato al convegno Forum on specification & Design Languages FDL 2016 tenutosi a Bremen, Germany nel 14-16 September 2016) [10.1109/FDL.2016.7880384]. | 1-gen-2016 | NITTALA, VENKATA RAMAKRISHNABARCHI, FRANCESCOURGESE, GIANVITOACQUAVIVA, ANDREA | 07880384.pdf |
Data and Commands Communication Protocol for Neuromorphic Platform Configuration / Siino, Alessandro; Barchi, Francesco; Davies, Sergio; Urgese, Gianvito; Acquaviva, Andrea. - ELETTRONICO. - (2016), pp. 23-30. (Intervento presentato al convegno 10th IEEE International Symposium on Embedded Multicore/Many-Core Systems-on-Chip, MCSoC 2016 tenutosi a Lione (France) nel 2016) [10.1109/MCSoC.2016.41]. | 1-gen-2016 | SIINO, ALESSANDROBARCHI, FRANCESCOURGESE, GIANVITOACQUAVIVA, ANDREA + | - |
isomiR-SEA: miRNA and isomiR expression level detection in seven RNA-Seq datasets / Urgese, Gianvito; Paciello, Giulia; Macii, Enrico; Acquaviva, Andrea; Ficarra, Elisa. - ELETTRONICO. - (2017). (Intervento presentato al convegno Joint 25th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and 16th European Conference on Computational Biology (ECCB) 2017 tenutosi a Prague nel 21-25 July 2017) [10.7490/f1000research.1114698.1]. | 1-gen-2017 | URGESE, GIANVITOPACIELLO, GIULIAMACII, EnricoACQUAVIVA, ANDREAFICARRA, ELISA | f1000research-173536_post_print.pdf |
A Convolutional Neural Network Fully Implemented on FPGA for Embedded Platforms / Bettoni, Marco; Urgese, Gianvito; Kobayashi, Yuki; Macii, Enrico; Acquaviva, Andrea. - ELETTRONICO. - (2017), pp. 49-52. (Intervento presentato al convegno New Generation of Circuits and Systems NGCAS 2017 tenutosi a Genova nel 7-9 September 2017) [10.1109/NGCAS.2017.16]. | 1-gen-2017 | BETTONI, MARCOURGESE, GIANVITOMACII, EnricoACQUAVIVA, ANDREA + | Urgese_CNN_PID4938321.pdf; 08052266_post_print_editor.pdf |
An Efficient MPI Implementation for Multi-Core Neuromorphic Platforms / Barchi, Francesco; Urgese, Gianvito; Macii, Enrico; Acquaviva, Andrea. - ELETTRONICO. - (2017), pp. 273-276. (Intervento presentato al convegno 2017 New Generation of CAS (NGCAS) tenutosi a Genova (IT) nel 7-9 Settembre 2017) [10.1109/NGCAS.2017.31]. | 1-gen-2017 | BARCHI, FRANCESCOURGESE, GIANVITOMACII, EnricoACQUAVIVA, ANDREA | 08052322_post_print_editor.pdf; main_pre_print.pdf |
The SeqAn C++ template library for efficient sequence analysis: A resource for programmers / Reinert, Knut; Dadi, Temesgen Hailemariam; Ehrhardt, Marcel; Hauswedell, Hannes; Mehringer, Svenja; Rahn, René; Kim, Jongkyu; Pockrandt, Christopher; Winkler, Jorg; Siragusa, Enrico; Urgese, Gianvito; Weese, David. - In: JOURNAL OF BIOTECHNOLOGY. - ISSN 0168-1656. - ELETTRONICO. - 261:(2017), pp. 157-168. [10.1016/j.jbiotec.2017.07.017] | 1-gen-2017 | URGESE, GIANVITO + | 1-s2.0-S0168165617315420-main_post_print_editor.pdf |
Work-in-Progress: Multiple Alignment of Packet Sequences for Efficient Communication in a Many-Core Neuromorphic System / Urgese, Gianvito; Peres, Luca; Barchi, Francesco; Macii, Enrico; Acquaviva, Andrea. - ELETTRONICO. - (2018). (Intervento presentato al convegno 2018 International Conference on Compilers, Architectures and Synthesis for Embedded Systems (CASES) nel 2018) [10.1109/CASES.2018.8516870]. | 1-gen-2018 | Gianvito UrgeseFrancesco BarchiEnrico MaciiAndrea Acquaviva + | urgese2018multipleFinal_IEEE_pre_print.pdf; 08516870_post_print_editor.pdf |
Directed Graph Placement for SNN simulation into a multi-core GALS architecture / Barchi, Francesco; Urgese, Gianvito; Acquaviva, Andrea; Macii, Enrico. - ELETTRONICO. - (2018). (Intervento presentato al convegno 26th IFIP/IEEE International Conference on Very Large Scale Integration (VLSI-SoC 2018) tenutosi a Verona, Italy nel October 8-10, 2018) [10.1109/VLSI-SoC.2018.8644782]. | 1-gen-2018 | Francesco BarchiGianvito UrgeseAndrea AcquavivaEnrico Macii | 08644782_post_print_editor.pdf; document_pre_print.pdf |
A Parallel Hardware Architecture For Quantum Annealing Algorithm Acceleration / Forno, Evelina; Acquaviva, Andrea; Yuki, Kobayashi; Macii, Enrico; Urgese, Gianvito. - ELETTRONICO. - (2018). (Intervento presentato al convegno IFIP/IEEE International Conference on Very Large Scale Integration (VLSI-SoC 2018) tenutosi a Verona nel 8-10 October 2018) [10.1109/VLSI-SoC.2018.8644777]. | 1-gen-2018 | FORNO, EVELINAAndrea AcquavivaEnrico MaciiGianvito Urgese + | forno2018parallel_pre_print.pdf; 08644777_post_print_editoriale.pdf |
Optimizing Network Traffic for Spiking Neural Network Simulations on Densely Interconnected Many-Core Neuromorphic Platforms / Urgese, Gianvito; Barchi, Francesco; Macii, Enrico; Acquaviva, Andrea. - In: IEEE TRANSACTIONS ON EMERGING TOPICS IN COMPUTING. - ISSN 2168-6750. - ELETTRONICO. - 6:3(2018), pp. 317-329. [10.1109/TETC.2016.2579605] | 1-gen-2018 | URGESE, GIANVITOBARCHI, FRANCESCOMACII, EnricoACQUAVIVA, ANDREA | Optimizing Network Traffic for Spiking Neural Network Simulations on Densely Interconnected Many-Core Neuromorphic Platforms_post_print_editor.pdf; document_pre-print.pdf; 07492182.pdf |
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