FICARRA, ELISA

FICARRA, ELISA  

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Citazione Data di pubblicazione Autori File
W2WNet: A two-module probabilistic Convolutional Neural Network with embedded data cleansing functionality / Ponzio, Francesco; Macii, Enrico; Ficarra, Elisa; Di Cataldo, Santa. - In: EXPERT SYSTEMS WITH APPLICATIONS. - ISSN 0957-4174. - 214:(2023), p. 119121. [10.1016/j.eswa.2022.119121] 1-gen-2023 Ponzio, FrancescoMacii, EnricoFicarra, ElisaDi Cataldo, Santa 1-s2.0-S095741742202139X-main.pdfW2WNet__a_two_module_probabilistic_Convolutional_Neural_Network_with_embedded_data_cleansing_functionality.pdf
A survey on data integration for multi-omics sample clustering / Lovino, M.; Randazzo, V.; Ciravegna, G.; Barbiero, P.; Ficarra, E.; Cirrincione, G.. - In: NEUROCOMPUTING. - ISSN 0925-2312. - ELETTRONICO. - 488:(2022), pp. 494-508. [10.1016/j.neucom.2021.11.094] 1-gen-2022 Lovino M.Randazzo V.Ciravegna G.Ficarra E.Cirrincione G. + Randazzo-ASurvey.pdf
Identifying the oncogenic potential of gene fusions exploiting miRNAs / Lovino, Marta; Montemurro, Marilisa; Barrese, VENERE SABRINA; Ficarra, Elisa. - In: JOURNAL OF BIOMEDICAL INFORMATICS. - ISSN 1532-0464. - 129:(2022). [10.1016/j.jbi.2022.104057] 1-gen-2022 Marta LovinoMarilisa MontemurroVenere Sabrina BarreseElisa Ficarra 1-s2.0-S1532046422000739-main.pdf
LaRA 2: parallel and vectorized program for sequence–structure alignment of RNA sequences / Winkler, Jörg.; Urgese, Gianvito.; Ficarra, Elisa.; Reinert, Knut. - In: BMC BIOINFORMATICS. - ISSN 1471-2105. - ELETTRONICO. - 23:1(2022), pp. 1-22. [10.1186/s12859-021-04532-7] 1-gen-2022 Urgese, Gianvito.Ficarra, Elisa. + s12859-021-04532-7.pdf
Exploration of Convolutional Neural Network models for source code classification / Barchi, F.; Parisi, E.; Urgese, G.; Ficarra, E.; Acquaviva, A.. - In: ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE. - ISSN 0952-1976. - ELETTRONICO. - 97:(2021), p. 104075. [10.1016/j.engappai.2020.104075] 1-gen-2021 Urgese G.Ficarra E. + 1-s2.0-S0952197620303353-main.pdf
Optimizing Quality Inspection and Control in Powder Bed Metal Additive Manufacturing: Challenges and Research Directions / DI CATALDO, Santa; Vinco, Sara; Urgese, Gianvito; Calignano, Flaviana; Ficarra, Elisa; Macii, Alberto; Macii, Enrico. - In: PROCEEDINGS OF THE IEEE. - ISSN 0018-9219. - ELETTRONICO. - 109:4(2021), pp. 326-346. [10.1109/JPROC.2021.3054628] 1-gen-2021 Santa Di CataldoSara VincoGianvito UrgeseFlaviana CalignanoElisa FicarraAlberto MaciiEnrico Macii FINAL VERSION.pdf09347446.pdf
PhyliCS: a Python library to explore scCNA data and quantify spatial tumor heterogeneity / Montemurro, Marilisa; Grassi, Elena; Pizzino, Carmelo Gabriele; Bertotti, Andrea; Ficarra, Elisa; Urgese, Gianvito. - In: BMC BIOINFORMATICS. - ISSN 1471-2105. - ELETTRONICO. - 22:1(2021), pp. 1-21. [10.1186/s12859-021-04277-3] 1-gen-2021 Montemurro, MarilisaFicarra, ElisaUrgese, Gianvito + s12859-021-04277-3.pdf
BioSeqZip: a collapser of NGS redundant reads for the optimisation of sequence analysis / Urgese, Gianvito; Parisi, Emanuele; Scicolone, Orazio; Di Cataldo, Santa; Ficarra, Elisa. - In: BIOINFORMATICS. - ISSN 1367-4803. - ELETTRONICO. - 36:9(2020), pp. 2705-2711. [10.1093/bioinformatics/btaa051] 1-gen-2020 Urgese, GianvitoParisi, EmanueleScicolone, OrazioDi Cataldo, SantaFicarra, Elisa bioinformatics_36_9_2705.pdf
Cytoarchitectural analysis of the neuron-to-glia association in the dorsal root ganglia of normal and diabetic mice / Ciglieri, Elisa; Vacca, Maurizia; Ferrini, Francesco; Atteya, Mona A; Aimar, Patrizia; Ficarra, Elisa; Di Cataldo, Santa; Merighi, Adalberto; Salio, Chiara. - In: JOURNAL OF ANATOMY. - ISSN 0021-8782. - 267:5(2020), pp. 988-997. [10.1111/joa.13252] 1-gen-2020 Ficarra, ElisaDi Cataldo, Santa + JANAT-2020-0197.R1_Proof_hi.pdfJournal of Anatomy - 2020 - Ciglieri - Cytoarchitectural analysis of the neuron‐to‐glia association in the dorsal root.pdf
DEEPrior: a deep learning tool for the prioritization of gene fusions / Lovino, Marta; Ciaburri, Maria Serena; Urgese, Gianvito; Di Cataldo, Santa; Ficarra, Elisa. - In: BIOINFORMATICS. - ISSN 1367-4803. - ELETTRONICO. - 36:10(2020), pp. 3248-3250. [10.1093/bioinformatics/btaa069] 1-gen-2020 Lovino, MartaCiaburri, Maria SerenaUrgese, GianvitoDi Cataldo, SantaFicarra, Elisa bioinformatics_36_10_3248.pdf
A Deep Learning Approach to the Screening of Oncogenic Gene Fusions in Humans / Lovino, Marta; Urgese, Gianvito; Macii, Enrico; Di Cataldo, Santa; Ficarra, Elisa. - In: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. - ISSN 1422-0067. - ELETTRONICO. - 20:7(2019), pp. 1-13. [10.3390/ijms20071645] 1-gen-2019 Lovino, MartaUrgese, GianvitoMacii, EnricoDi Cataldo, SantaFicarra, Elisa ijms-20-01645-v2.pdf
Aneuploid acute myeloid leukemia exhibits a signature of genomic alterations in the cell cycle and protein degradation machinery / Simonetti, Giorgia; Padella, Antonella; do Valle, Italo Farìa; Fontana, Maria Chiara; Fonzi, Eugenio; Bruno, Samantha; Baldazzi, Carmen; Guadagnuolo, Viviana; Manfrini, Marco; Ferrari, Anna; Paolini, Stefania; Papayannidis, Cristina; Marconi, Giovanni; Franchini, Eugenia; Zuffa, Elisa; Laginestra, Maria Antonella; Zanotti, Federica; Astolfi, Annalisa; Iacobucci, Ilaria; Bernardi, Simona; Sazzini, Marco; Ficarra, Elisa; Hernandez, Jesus Maria; Vandenberghe, Peter; Cools, Jan; Bullinger, Lars; Ottaviani, Emanuela; Testoni, Nicoletta; Cavo, Michele; Haferlach, Torsten; Castellani, Gastone; Remondini, Daniel; Martinelli, Giovanni. - In: CANCER. - ISSN 0008-543X. - ELETTRONICO. - 125:5(2019), pp. 712-725. [10.1002/cncr.31837] 1-gen-2019 Ficarra, Elisa + Simonetti_et_al-2019-Cancer.pdf
Dealing with Lack of Training Data for Convolutional Neural Networks: The Case of Digital Pathology / Ponzio, Francesco; Urgese, Gianvito; Ficarra, Elisa; DI CATALDO, Santa. - In: ELECTRONICS. - ISSN 2079-9292. - ELETTRONICO. - 8:3(2019). [10.3390/electronics8030256] 1-gen-2019 Francesco PonzioGianvito UrgeseElisa FicarraSanta Di Cataldo electronics-08-00256.pdf
Exploiting Gene Expression Profiles for the Automated Prediction of Connectivity between Brain Regions / Roberti, Ilaria; Lovino, Marta; Di Cataldo, Santa; Ficarra, Elisa; Urgese, Gianvito. - In: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. - ISSN 1422-0067. - ELETTRONICO. - 20:8(2019). [10.3390/ijms20082035] 1-gen-2019 Lovino, MartaDi Cataldo, SantaFicarra, ElisaUrgese, Gianvito + ijms-20-02035.pdf
Novel and Rare Fusion Transcripts Involving Transcription Factors and Tumor Suppressor Genes in Acute Myeloid Leukemia / Padella and, Antonella; Simonetti and, Giorgia; Paciello and, Giulia; Giotopoulos and, George; Baldazzi and, Carmen; Righi and, Simona; Ghetti and, Martina; Stengel and, Anna; Guadagnuolo and, Viviana; De Tommaso and, Rossella; Papayannidis and, Cristina; Robustelli and, Valentina; Franchini and, Eugenia; Ghelli Luserna di Rorà and, Andrea; Ferrari and, Anna; Fontana and Maria, Chiara; Bruno and, Samantha; Ottaviani and, Emanuela; Soverini and, Simona; Storlazzi and Clelia, Tiziana; Haferlach and, Claudia; Sabattini and, Elena; Testoni and, Nicoletta; Iacobucci and, Ilaria; Huntly and Brian, J. P.; Ficarra, Elisa; Martinelli and, Giovanni. - In: CANCERS. - ISSN 2072-6694. - ELETTRONICO. - 11:12(2019). [10.3390/cancers11121951] 1-gen-2019 Ficarra and Elisa + cancers-11-01951-v2_Fusions_Padella.pdf
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API / Desvignes, Thomas; Loher, Phillipe; Eilbeck, Karen; Ma, Jeffery; Urgese, Gianvito; Fromm, Bastian; Sydes, Jason; Aparicio-Puerta, Ernesto; Barrera, Victor; Espin, Roderic; Londin, Eric; Telonis, Aristeidis G; Ficarra, Elisa; Friedlander, Marc R; Postlethwait, John H; Rigoutsos, Isidore; Hackenberg, Michael; Vlachos, Ioannis S; Halushka, Marc K.; Pantano, Lorena. - In: BIOINFORMATICS. - ISSN 1367-4811. - ELETTRONICO. - 36:3(2019), pp. 698-703. [10.1093/bioinformatics/btz675] 1-gen-2019 Urgese, GianvitoFicarra, Elisa + btz675.pdf505222v1_pre_print.pdf
MDM2 and Aurora Kinase a Contribute to SETD2 Loss of Function in Advanced Systemic Mastocytosis: Implications for Pathogenesis and Treatment / Mancini, Manuela; Monaldi, Cecilia; De Santis, Sara; Papayannidis, Cristina; Rondoni, Michela; Bavaro, Luana; Martelli, Margherita; Maria Chiara, Abbenante; Curti, Antonio; Ficarra, Elisa; Paciello, Giulia; Chiara Fontana, Maria; Zanotti, Roberta; Bonifacio, Massimiliano; Scaffidi, Luigi; Pagano, Livio; Criscuolo, Marianna; Albano, Francesco; Ciceri, Fabio; Elena, Chiara; Tosi, Patrizia; Delledonne, Massimo; Avanzato, Carla; Xumerle, Luciano; Valent, Peter; Martinelli, GIOVANNI ATTILIO; Cavo, Michele; Soverini, Simona. - In: BLOOD. - ISSN 0006-4971. - ELETTRONICO. - 132:1(2018), pp. 1779-1779. [10.1182/blood-2018-99-113278] 1-gen-2018 Elisa FicarraGiulia PacielloGiovanni Martinelli + -
RALE051: a novel established cell line of sporadic Burkitt lymphoma / L’Abbate, Alberto; Iacobucci, Ilaria; Lonoce, Angelo; Turchiano, Antonella; Ficarra, Elisa; Paciello, Giulia; Cattina, Federica; Ferrari, Anna; Imbrogno, Enrica; Agostinelli, Claudio; Zinzani, Pierluigi; Martinelli, Giovanni; Derenzini, Enrico; Storlazzi, Clelia Tiziana. - In: LEUKEMIA & LYMPHOMA. - ISSN 1042-8194. - ELETTRONICO. - 59:5(2018), pp. 1252-1255. [10.1080/10428194.2017.1372580] 1-gen-2018 Ficarra, ElisaPaciello, Giulia + -
FuGePrior: A novel gene fusion prioritization algorithm based on accurate fusion structure analysis in cancer RNA-seq samples / Paciello, Giulia; Ficarra, Elisa. - In: BMC BIOINFORMATICS. - ISSN 1471-2105. - 18:1(2017), pp. 1-12. [10.1186/s12859-016-1450-6] 1-gen-2017 PACIELLO, GIULIAFICARRA, ELISA 12859_2016_Article_1450_FuGePrior.pdf
Mining textural knowledge in biological images: applications, methods and trends / DI CATALDO, Santa; Ficarra, Elisa. - In: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. - ISSN 2001-0370. - STAMPA. - 15:(2017), pp. 56-67. [10.1016/j.csbj.2016.11.002] 1-gen-2017 DI CATALDO, SANTAFICARRA, ELISA 2017_ComputationalAndStructural.pdf