Archivio Istituzionale della RicercaFICARRA, ELISA
W2WNet: A two-module probabilistic Convolutional Neural Network with embedded data cleansing functionality
2023 Ponzio, Francesco; Macii, Enrico; Ficarra, Elisa; Di Cataldo, Santa
A survey on data integration for multi-omics sample clustering
2022 Lovino, M.; Randazzo, V.; Ciravegna, G.; Barbiero, P.; Ficarra, E.; Cirrincione, G.
Identifying the oncogenic potential of gene fusions exploiting miRNAs
2022 Lovino, Marta; Montemurro, Marilisa; Barrese, VENERE SABRINA; Ficarra, Elisa
LaRA 2: parallel and vectorized program for sequence–structure alignment of RNA sequences
2022 Winkler, Jörg.; Urgese, Gianvito.; Ficarra, Elisa.; Reinert, Knut
Exploration of Convolutional Neural Network models for source code classification
2021 Barchi, F.; Parisi, E.; Urgese, G.; Ficarra, E.; Acquaviva, A.
Optimizing Quality Inspection and Control in Powder Bed Metal Additive Manufacturing: Challenges and Research Directions
2021 DI CATALDO, Santa; Vinco, Sara; Urgese, Gianvito; Calignano, Flaviana; Ficarra, Elisa; Macii, Alberto; Macii, Enrico
PhyliCS: a Python library to explore scCNA data and quantify spatial tumor heterogeneity
2021 Montemurro, Marilisa; Grassi, Elena; Pizzino, Carmelo Gabriele; Bertotti, Andrea; Ficarra, Elisa; Urgese, Gianvito
BioSeqZip: a collapser of NGS redundant reads for the optimisation of sequence analysis
2020 Urgese, Gianvito; Parisi, Emanuele; Scicolone, Orazio; Di Cataldo, Santa; Ficarra, Elisa
Cytoarchitectural analysis of the neuron-to-glia association in the dorsal root ganglia of normal and diabetic mice
2020 Ciglieri, Elisa; Vacca, Maurizia; Ferrini, Francesco; Atteya, Mona A; Aimar, Patrizia; Ficarra, Elisa; Di Cataldo, Santa; Merighi, Adalberto; Salio, Chiara
DEEPrior: a deep learning tool for the prioritization of gene fusions
2020 Lovino, Marta; Ciaburri, Maria Serena; Urgese, Gianvito; Di Cataldo, Santa; Ficarra, Elisa
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API
2020 Desvignes, Thomas; Loher, Phillipe; Eilbeck, Karen; Ma, Jeffery; Urgese, Gianvito; Fromm, Bastian; Sydes, Jason; Aparicio-Puerta, Ernesto; Barrera, Victor; Espin, Roderic; Londin, Eric; Telonis, Aristeidis G; Ficarra, Elisa; Friedlander, Marc R; Postlethwait, John H; Rigoutsos, Isidore; Hackenberg, Michael; Vlachos, Ioannis S; Halushka, Marc K.; Pantano, Lorena
A Deep Learning Approach to the Screening of Oncogenic Gene Fusions in Humans
2019 Lovino, Marta; Urgese, Gianvito; Macii, Enrico; Di Cataldo, Santa; Ficarra, Elisa
Aneuploid acute myeloid leukemia exhibits a signature of genomic alterations in the cell cycle and protein degradation machinery
2019 Simonetti, Giorgia; Padella, Antonella; do Valle, Italo Farìa; Fontana, Maria Chiara; Fonzi, Eugenio; Bruno, Samantha; Baldazzi, Carmen; Guadagnuolo, Viviana; Manfrini, Marco; Ferrari, Anna; Paolini, Stefania; Papayannidis, Cristina; Marconi, Giovanni; Franchini, Eugenia; Zuffa, Elisa; Laginestra, Maria Antonella; Zanotti, Federica; Astolfi, Annalisa; Iacobucci, Ilaria; Bernardi, Simona; Sazzini, Marco; Ficarra, Elisa; Hernandez, Jesus Maria; Vandenberghe, Peter; Cools, Jan; Bullinger, Lars; Ottaviani, Emanuela; Testoni, Nicoletta; Cavo, Michele; Haferlach, Torsten; Castellani, Gastone; Remondini, Daniel; Martinelli, Giovanni
Dealing with Lack of Training Data for Convolutional Neural Networks: The Case of Digital Pathology
2019 Ponzio, Francesco; Urgese, Gianvito; Ficarra, Elisa; DI CATALDO, Santa
Exploiting Gene Expression Profiles for the Automated Prediction of Connectivity between Brain Regions
2019 Roberti, Ilaria; Lovino, Marta; Di Cataldo, Santa; Ficarra, Elisa; Urgese, Gianvito
Novel and Rare Fusion Transcripts Involving Transcription Factors and Tumor Suppressor Genes in Acute Myeloid Leukemia
2019 Padella and, Antonella; Simonetti and, Giorgia; Paciello and, Giulia; Giotopoulos and, George; Baldazzi and, Carmen; Righi and, Simona; Ghetti and, Martina; Stengel and, Anna; Guadagnuolo and, Viviana; De Tommaso and, Rossella; Papayannidis and, Cristina; Robustelli and, Valentina; Franchini and, Eugenia; Ghelli Luserna di Rorà and, Andrea; Ferrari and, Anna; Fontana and Maria, Chiara; Bruno and, Samantha; Ottaviani and, Emanuela; Soverini and, Simona; Storlazzi and Clelia, Tiziana; Haferlach and, Claudia; Sabattini and, Elena; Testoni and, Nicoletta; Iacobucci and, Ilaria; Huntly and Brian, J. P.; Ficarra, Elisa; Martinelli and, Giovanni
MDM2 and Aurora Kinase a Contribute to SETD2 Loss of Function in Advanced Systemic Mastocytosis: Implications for Pathogenesis and Treatment
2018 Mancini, Manuela; Monaldi, Cecilia; De Santis, Sara; Papayannidis, Cristina; Rondoni, Michela; Bavaro, Luana; Martelli, Margherita; Maria Chiara, Abbenante; Curti, Antonio; Ficarra, Elisa; Paciello, Giulia; Chiara Fontana, Maria; Zanotti, Roberta; Bonifacio, Massimiliano; Scaffidi, Luigi; Pagano, Livio; Criscuolo, Marianna; Albano, Francesco; Ciceri, Fabio; Elena, Chiara; Tosi, Patrizia; Delledonne, Massimo; Avanzato, Carla; Xumerle, Luciano; Valent, Peter; Martinelli, GIOVANNI ATTILIO; Cavo, Michele; Soverini, Simona
RALE051: a novel established cell line of sporadic Burkitt lymphoma
2018 L’Abbate, Alberto; Iacobucci, Ilaria; Lonoce, Angelo; Turchiano, Antonella; Ficarra, Elisa; Paciello, Giulia; Cattina, Federica; Ferrari, Anna; Imbrogno, Enrica; Agostinelli, Claudio; Zinzani, Pierluigi; Martinelli, Giovanni; Derenzini, Enrico; Storlazzi, Clelia Tiziana
FuGePrior: A novel gene fusion prioritization algorithm based on accurate fusion structure analysis in cancer RNA-seq samples
2017 Paciello, Giulia; Ficarra, Elisa
Mining textural knowledge in biological images: applications, methods and trends
2017 DI CATALDO, Santa; Ficarra, Elisa
| Citazione | Data di pubblicazione | Autori | File |
|---|---|---|---|
| W2WNet: A two-module probabilistic Convolutional Neural Network with embedded data cleansing functionality / Ponzio, Francesco; Macii, Enrico; Ficarra, Elisa; Di Cataldo, Santa. - In: EXPERT SYSTEMS WITH APPLICATIONS. - ISSN 0957-4174. - 214:(2023), p. 119121. [10.1016/j.eswa.2022.119121] | 1-gen-2023 | Ponzio, FrancescoMacii, EnricoFicarra, ElisaDi Cataldo, Santa | 1-s2.0-S095741742202139X-main.pdf; W2WNet__a_two_module_probabilistic_Convolutional_Neural_Network_with_embedded_data_cleansing_functionality.pdf |
| A survey on data integration for multi-omics sample clustering / Lovino, M., Randazzo, V., Ciravegna, G., Barbiero, P., Ficarra, E., Cirrincione, G.. - In: NEUROCOMPUTING. - ISSN 0925-2312. - ELETTRONICO. - 488:(2022), pp. 494-508. [10.1016/j.neucom.2021.11.094] | 1-gen-2022 | Lovino M.Randazzo V.Ciravegna G.Ficarra E.Cirrincione G. + | Randazzo-ASurvey.pdf |
| Identifying the oncogenic potential of gene fusions exploiting miRNAs / Lovino, M., Montemurro, M., Barrese, V.S., Ficarra, E.. - In: JOURNAL OF BIOMEDICAL INFORMATICS. - ISSN 1532-0464. - 129:(2022). [10.1016/j.jbi.2022.104057] | 1-gen-2022 | Marta LovinoMarilisa MontemurroVenere Sabrina BarreseElisa Ficarra | 1-s2.0-S1532046422000739-main.pdf |
| LaRA 2: parallel and vectorized program for sequence–structure alignment of RNA sequences / Winkler, Jörg.; Urgese, Gianvito.; Ficarra, Elisa.; Reinert, Knut. - In: BMC BIOINFORMATICS. - ISSN 1471-2105. - ELETTRONICO. - 23:1(2022), pp. 1-22. [10.1186/s12859-021-04532-7] | 1-gen-2022 | Urgese, Gianvito.Ficarra, Elisa. + | s12859-021-04532-7.pdf |
| Exploration of Convolutional Neural Network models for source code classification / Barchi, F., Parisi, E., Urgese, G., Ficarra, E., Acquaviva, A.. - In: ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE. - ISSN 0952-1976. - ELETTRONICO. - 97:(2021), p. 104075. [10.1016/j.engappai.2020.104075] | 1-gen-2021 | Urgese G.Ficarra E. + | 1-s2.0-S0952197620303353-main.pdf |
| Optimizing Quality Inspection and Control in Powder Bed Metal Additive Manufacturing: Challenges and Research Directions / DI CATALDO, S., Vinco, S., Urgese, G., Calignano, F., Ficarra, E., Macii, A., Macii, E.. - In: PROCEEDINGS OF THE IEEE. - ISSN 0018-9219. - ELETTRONICO. - 109:4(2021), pp. 326-346. [10.1109/JPROC.2021.3054628] | 1-gen-2021 | Santa Di CataldoSara VincoGianvito UrgeseFlaviana CalignanoElisa FicarraAlberto MaciiEnrico Macii | FINAL VERSION.pdf; 09347446.pdf |
| PhyliCS: a Python library to explore scCNA data and quantify spatial tumor heterogeneity / Montemurro, M., Grassi, E., Pizzino, C.G., Bertotti, A., Ficarra, E., Urgese, G.. - In: BMC BIOINFORMATICS. - ISSN 1471-2105. - ELETTRONICO. - 22:1(2021), pp. 1-21. [10.1186/s12859-021-04277-3] | 1-gen-2021 | Montemurro, MarilisaFicarra, ElisaUrgese, Gianvito + | s12859-021-04277-3.pdf |
| BioSeqZip: a collapser of NGS redundant reads for the optimisation of sequence analysis / Urgese, G., Parisi, E., Scicolone, O., Di Cataldo, S., Ficarra, E.. - In: BIOINFORMATICS. - ISSN 1367-4803. - ELETTRONICO. - 36:9(2020), pp. 2705-2711. [10.1093/bioinformatics/btaa051] | 1-gen-2020 | Urgese, GianvitoParisi, EmanueleScicolone, OrazioDi Cataldo, SantaFicarra, Elisa | bioinformatics_36_9_2705.pdf |
| Cytoarchitectural analysis of the neuron-to-glia association in the dorsal root ganglia of normal and diabetic mice / Ciglieri, E., Vacca, M., Ferrini, F., Atteya, M.A., Aimar, P., Ficarra, E., Di Cataldo, S., Merighi, A., Salio, C.. - In: JOURNAL OF ANATOMY. - ISSN 0021-8782. - 267:5(2020), pp. 988-997. [10.1111/joa.13252] | 1-gen-2020 | Ficarra, ElisaDi Cataldo, Santa + | JANAT-2020-0197.R1_Proof_hi.pdf; Journal of Anatomy - 2020 - Ciglieri - Cytoarchitectural analysis of the neuron‐to‐glia association in the dorsal root.pdf |
| DEEPrior: a deep learning tool for the prioritization of gene fusions / Lovino, M., Ciaburri, M.S., Urgese, G., Di Cataldo, S., Ficarra, E.. - In: BIOINFORMATICS. - ISSN 1367-4803. - ELETTRONICO. - 36:10(2020), pp. 3248-3250. [10.1093/bioinformatics/btaa069] | 1-gen-2020 | Lovino, MartaCiaburri, Maria SerenaUrgese, GianvitoDi Cataldo, SantaFicarra, Elisa | bioinformatics_36_10_3248.pdf |
| Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API / Desvignes, T., Loher, P., Eilbeck, K., Ma, J., Urgese, G., Fromm, B., Sydes, J., Aparicio-Puerta, E., Barrera, V., Espin, R., Londin, E., Telonis, A.G., Ficarra, E., Friedlander, M.R., Postlethwait, J.H., Rigoutsos, I., Hackenberg, M., Vlachos, I.S., Halushka, M.K., Pantano, L.. - In: BIOINFORMATICS. - ISSN 1367-4811. - ELETTRONICO. - 36:3(2020), pp. 698-703. [10.1093/bioinformatics/btz675] | 1-gen-2020 | Urgese, GianvitoFicarra, Elisa + | btz675.pdf; 505222v1_pre_print.pdf |
| A Deep Learning Approach to the Screening of Oncogenic Gene Fusions in Humans / Lovino, Marta; Urgese, Gianvito; Macii, Enrico; Di Cataldo, Santa; Ficarra, Elisa. - In: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. - ISSN 1422-0067. - ELETTRONICO. - 20:7(2019), pp. 1-13. [10.3390/ijms20071645] | 1-gen-2019 | Lovino, MartaUrgese, GianvitoMacii, EnricoDi Cataldo, SantaFicarra, Elisa | ijms-20-01645-v2.pdf |
| Aneuploid acute myeloid leukemia exhibits a signature of genomic alterations in the cell cycle and protein degradation machinery / Simonetti, Giorgia; Padella, Antonella; do Valle, Italo Farìa; Fontana, Maria Chiara; Fonzi, Eugenio; Bruno, Samantha; Baldazzi, Carmen; Guadagnuolo, Viviana; Manfrini, Marco; Ferrari, Anna; Paolini, Stefania; Papayannidis, Cristina; Marconi, Giovanni; Franchini, Eugenia; Zuffa, Elisa; Laginestra, Maria Antonella; Zanotti, Federica; Astolfi, Annalisa; Iacobucci, Ilaria; Bernardi, Simona; Sazzini, Marco; Ficarra, Elisa; Hernandez, Jesus Maria; Vandenberghe, Peter; Cools, Jan; Bullinger, Lars; Ottaviani, Emanuela; Testoni, Nicoletta; Cavo, Michele; Haferlach, Torsten; Castellani, Gastone; Remondini, Daniel; Martinelli, Giovanni. - In: CANCER. - ISSN 0008-543X. - ELETTRONICO. - 125:5(2019), pp. 712-725. [10.1002/cncr.31837] | 1-gen-2019 | Ficarra, Elisa + | Simonetti_et_al-2019-Cancer.pdf |
| Dealing with Lack of Training Data for Convolutional Neural Networks: The Case of Digital Pathology / Ponzio, F., Urgese, G., Ficarra, E., DI CATALDO, S.. - In: ELECTRONICS. - ISSN 2079-9292. - ELETTRONICO. - 8:3(2019). [10.3390/electronics8030256] | 1-gen-2019 | Francesco PonzioGianvito UrgeseElisa FicarraSanta Di Cataldo | electronics-08-00256.pdf |
| Exploiting Gene Expression Profiles for the Automated Prediction of Connectivity between Brain Regions / Roberti, I., Lovino, M., Di Cataldo, S., Ficarra, E., Urgese, G.. - In: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. - ISSN 1422-0067. - ELETTRONICO. - 20:8(2019). [10.3390/ijms20082035] | 1-gen-2019 | Lovino, MartaDi Cataldo, SantaFicarra, ElisaUrgese, Gianvito + | ijms-20-02035.pdf |
| Novel and Rare Fusion Transcripts Involving Transcription Factors and Tumor Suppressor Genes in Acute Myeloid Leukemia / Padella and, A., Simonetti and, G., Paciello and, G., Giotopoulos and, G., Baldazzi and, C., Righi and, S., Ghetti and, M., Stengel and, A., Guadagnuolo and, V., De Tommaso and, R., Papayannidis and, C., Robustelli and, V., Franchini and, E., Ghelli Luserna di Rorà and, A., Ferrari and, A., Fontana and Maria, C., Bruno and, S., Ottaviani and, E., Soverini and, S., Storlazzi and Clelia, T., et al.. - In: CANCERS. - ISSN 2072-6694. - ELETTRONICO. - 11:12(2019). [10.3390/cancers11121951] | 1-gen-2019 | Ficarra and Elisa + | cancers-11-01951-v2_Fusions_Padella.pdf |
| MDM2 and Aurora Kinase a Contribute to SETD2 Loss of Function in Advanced Systemic Mastocytosis: Implications for Pathogenesis and Treatment / Mancini, M., Monaldi, C., De Santis, S., Papayannidis, C., Rondoni, M., Bavaro, L., Martelli, M., Maria Chiara, A., Curti, A., Ficarra, E., Paciello, G., Chiara Fontana, M., Zanotti, R., Bonifacio, M., Scaffidi, L., Pagano, L., Criscuolo, M., Albano, F., Ciceri, F., Elena, C., et al.. - In: BLOOD. - ISSN 0006-4971. - ELETTRONICO. - 132:1(2018), pp. 1779-1779. [10.1182/blood-2018-99-113278] | 1-gen-2018 | Elisa FicarraGiulia PacielloGiovanni Martinelli + | - |
| RALE051: a novel established cell line of sporadic Burkitt lymphoma / L’Abbate, Alberto; Iacobucci, Ilaria; Lonoce, Angelo; Turchiano, Antonella; Ficarra, Elisa; Paciello, Giulia; Cattina, Federica; Ferrari, Anna; Imbrogno, Enrica; Agostinelli, Claudio; Zinzani, Pierluigi; Martinelli, Giovanni; Derenzini, Enrico; Storlazzi, Clelia Tiziana. - In: LEUKEMIA & LYMPHOMA. - ISSN 1042-8194. - ELETTRONICO. - 59:5(2018), pp. 1252-1255. [10.1080/10428194.2017.1372580] | 1-gen-2018 | Ficarra, ElisaPaciello, Giulia + | - |
| FuGePrior: A novel gene fusion prioritization algorithm based on accurate fusion structure analysis in cancer RNA-seq samples / Paciello, G., Ficarra, E.. - In: BMC BIOINFORMATICS. - ISSN 1471-2105. - 18:1(2017), pp. 1-12. [10.1186/s12859-016-1450-6] | 1-gen-2017 | PACIELLO, GIULIAFICARRA, ELISA | 12859_2016_Article_1450_FuGePrior.pdf |
| Mining textural knowledge in biological images: applications, methods and trends / DI CATALDO, Santa; Ficarra, Elisa. - In: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. - ISSN 2001-0370. - STAMPA. - 15:(2017), pp. 56-67. [10.1016/j.csbj.2016.11.002] | 1-gen-2017 | DI CATALDO, SANTAFICARRA, ELISA | 2017_ComputationalAndStructural.pdf |