Next Generation Sequencing technology, on the one hand, allows a more accurate analysis, and, on the other hand, increases the amount of data to process. A new protocol for sequencing the messenger RNA in a cell, known as RNA- Seq, generates millions of short sequence fragments in a single run. These fragments, or reads, can be used to measure levels of gene expression and to identify novel splice variants of genes. The proposed solution is a distributed architecture consisting of a Grid Environment and a Virtual Grid Environment, in order to reduce processing time by making the system scalable and flexible

Virtual Environment for Next Generation Sequencing Analysis / Terzo, Olivier; Mossucca, L; Acquaviva, Andrea; Abate, Francesco; Provenzano, R.. - ELETTRONICO. - (2012). ((Intervento presentato al convegno The Eighth International Conference on Networking and Services tenutosi a St. Maarten, Netherlands Antilles nel March 25-30, 2012.

Virtual Environment for Next Generation Sequencing Analysis

TERZO, OLIVIER;ACQUAVIVA, ANDREA;ABATE, FRANCESCO;
2012

Abstract

Next Generation Sequencing technology, on the one hand, allows a more accurate analysis, and, on the other hand, increases the amount of data to process. A new protocol for sequencing the messenger RNA in a cell, known as RNA- Seq, generates millions of short sequence fragments in a single run. These fragments, or reads, can be used to measure levels of gene expression and to identify novel splice variants of genes. The proposed solution is a distributed architecture consisting of a Grid Environment and a Virtual Grid Environment, in order to reduce processing time by making the system scalable and flexible
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Utilizza questo identificativo per citare o creare un link a questo documento: http://hdl.handle.net/11583/2497851
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