Next Generation Sequencing technology, on the one hand, allows a more accurate analysis, and, on the other hand, increases the amount of data to process. A new protocol for sequencing the messenger RNA in a cell, known as RNA- Seq, generates millions of short sequence fragments in a single run. These fragments, or reads, can be used to measure levels of gene expression and to identify novel splice variants of genes. The proposed solution is a distributed architecture consisting of a Grid Environment and a Virtual Grid Environment, in order to reduce processing time by making the system scalable and flexible
Virtual Environment for Next Generation Sequencing Analysis / Terzo, Olivier; Mossucca, L; Acquaviva, Andrea; Abate, Francesco; Provenzano, R.. - ELETTRONICO. - (2012). (Intervento presentato al convegno The Eighth International Conference on Networking and Services tenutosi a St. Maarten, Netherlands Antilles nel March 25-30, 2012).
Virtual Environment for Next Generation Sequencing Analysis
TERZO, OLIVIER;ACQUAVIVA, ANDREA;ABATE, FRANCESCO;
2012
Abstract
Next Generation Sequencing technology, on the one hand, allows a more accurate analysis, and, on the other hand, increases the amount of data to process. A new protocol for sequencing the messenger RNA in a cell, known as RNA- Seq, generates millions of short sequence fragments in a single run. These fragments, or reads, can be used to measure levels of gene expression and to identify novel splice variants of genes. The proposed solution is a distributed architecture consisting of a Grid Environment and a Virtual Grid Environment, in order to reduce processing time by making the system scalable and flexibleFile | Dimensione | Formato | |
---|---|---|---|
ICNS2012_BIO_or.pdf
accesso aperto
Tipologia:
2. Post-print / Author's Accepted Manuscript
Licenza:
PUBBLICO - Tutti i diritti riservati
Dimensione
213.91 kB
Formato
Adobe PDF
|
213.91 kB | Adobe PDF | Visualizza/Apri |
Pubblicazioni consigliate
I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.
https://hdl.handle.net/11583/2497851
Attenzione
Attenzione! I dati visualizzati non sono stati sottoposti a validazione da parte dell'ateneo