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geneEX a novel tool to assess differential expression from gene and exon sequencing data
2018 Scicolone, ORAZIO MARIA; Paciello, Giulia; Ficarra, Elisa
isomiR-SEA: miRNA and isomiR expression level detection in seven RNA-Seq datasets
2017 Urgese, Gianvito; Paciello, Giulia; Macii, Enrico; Acquaviva, Andrea; Ficarra, Elisa
A COMBINED APPROACH TO DETECT RARE FUSION EVENTS IN ACUTE MYELOID LEUKEMIA
2016 A., Padella; G., Simonetti; Paciello, Giulia; A., Ferrari; E., Zago; C., Baldazzi; V., Guadagnuolo; C., Papayannidis; V., Robustelli; E., Imbrogno; N., Testoni; M., Cavo; M., Delledonne; I., Iacobucci; Ct, Storlazzi; Ficarra, Elisa; G., Martinelli
Detection of rearranged light chain sequences by RNA-Seq in B-cell lymphomas and reactive lymphadenopathies
2016 Paciello, Giulia; Pighi, C.; Ficarra, Elisa; Zamo', A.
Directly linking non-coding SNPs to changes in epithelial enhancer activity
2016 Jacobs, J.; Christiaens, ; V, .; Potier, ; D, .; Svetlichnyy, ; D, .; Romanelli, ; L, .; Taskiran, Ihsan; I, .; Paciello, Giulia; G, .; Aerts,
On the relevance of a complete characterisation of miRNAs, isomiRs and miRNA-mRNA interaction sites through miRNA-specific alignment tools
2015 Urgese, Gianvito; Paciello, Giulia; Ficarra, Elisa; Macii, Enrico; Acquaviva, Andrea
A Novel Pipeline for Identification and Prioritization of Gene Fusions in Patient-derived Xenografts of Metastatic Colorectal Cancer
2014 Paciello, Giulia; Acquaviva, Andrea; Consalvo, Petti; Claudio, Isella; Enzo, Medico; Ficarra, Elisa
Dynamic Gap Selector: A Smith Waterman Sequence Alignment Algorithm with Affine Gap Model Optimisation
2014 Urgese, Gianvito; Paciello, Giulia; Acquaviva, Andrea; Ficarra, Elisa; Graziano, Mariagrazia; Zamboni, Maurizio
miR-SEA: miRNA Seed Extension based Aligner Pipeline for NGS Expression Level Extraction
2014 Urgese, Gianvito; Paciello, Giulia; Isella, C.; Medico, E.; Macii, Enrico; Ficarra, Elisa; Acquaviva, Andrea
A novel pipeline for V(D)J junction identification using RNA-Seq paired-end reads
2013 Paciello, Giulia; Ficarra, Elisa; Alberto, Zamò; Chiara, Pighi; Carmelo, Foti; Abate, Francesco; Macii, Enrico; Acquaviva, Andrea
A NOVEL ANALYSIS FLOW FOR FUSED TRANSCRIPTS DISCOVERY FROM PAIRED-END RNA-SEQ DATA
2012 Abate, Francesco; Paciello, Giulia; Acquaviva, Andrea; Ficarra, Elisa; Ferrarini, A.; Delledonne, M.; Macii, Enrico
A novel framework for chimeric transcript detection based on accurate gene fusion model
2011 Abate, Francesco; Acquaviva, Andrea; Ficarra, Elisa; Paciello, Giulia; Macii, Enrico; A., Ferrarini; M., Delledonne; S., Soverini; G., Martinelli
Binding free energy calculation via Molecular Dynamics simulations for a miRNA:mRNA interaction
2011 Paciello, Giulia; Acquaviva, Andrea; Ficarra, Elisa; Deriu, MARCO AGOSTINO; Macii, Enrico
| Citazione | Data di pubblicazione | Autori | File |
|---|---|---|---|
| geneEX a novel tool to assess differential expression from gene and exon sequencing data / Scicolone, O.M., Paciello, G., Ficarra, E.. - 3:(2018), pp. 174-181. (9th International Conference on Bioinformatics Models, Methods and Algorithms, BIOINFORMATICS 2018 - Part of 11th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2018 Funchal - Madeira, Portugal 19-21 January, 2018). | 1-gen-2018 | SCICOLONE, ORAZIO MARIAPaciello, GiuliaFicarra, Elisa | geneEX.pdf |
| isomiR-SEA: miRNA and isomiR expression level detection in seven RNA-Seq datasets / Urgese, G., Paciello, G., Macii, E., Acquaviva, A., Ficarra, E.. - ELETTRONICO. - (2017). (Joint 25th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and 16th European Conference on Computational Biology (ECCB) 2017 Prague 21-25 July 2017) [10.7490/f1000research.1114698.1]. | 1-gen-2017 | URGESE, GIANVITOPACIELLO, GIULIAMACII, EnricoACQUAVIVA, ANDREAFICARRA, ELISA | f1000research-173536_post_print.pdf |
| A COMBINED APPROACH TO DETECT RARE FUSION EVENTS IN ACUTE MYELOID LEUKEMIA / A., P., G., S., Paciello, G., A., F., E., Z., C., B., V., G., C., P., V., R., E., I., N., T., M., C., M., D., I., I., Ct, S., Ficarra, E., G., M.. - In: HAEMATOLOGICA. - ISSN 0390-6078. - ELETTRONICO. - 101:(2016), pp. 666-667. (21st Congress Of The European Hematology Association Copenhagen, Denmark June 9–12, 2016). | 1-gen-2016 | PACIELLO, GIULIAFICARRA, ELISA + | - |
| Detection of rearranged light chain sequences by RNA-Seq in B-cell lymphomas and reactive lymphadenopathies / Paciello, G., Pighi, C., Ficarra, E., Zamo', A.. - (2016). (EAHP 2016: 18th Meeting of the European Association for Hemathopathology Basilea 3-8 Sept. 2016). | 1-gen-2016 | PACIELLO, GIULIAFICARRA, ELISA + | - |
| Directly linking non-coding SNPs to changes in epithelial enhancer activity / Jacobs, J., Christiaens, ., V, ., Potier, ., D, ., Svetlichnyy, ., D, ., Romanelli, ., L, ., Taskiran, I., I, ., Paciello, G., G, ., Aerts,. - (2016). (EMBL Transcription and Chromatin, Edition 12 Heidelberg 27-30 Aug 2016). | 1-gen-2016 | PACIELLO, GIULIA + | - |
| On the relevance of a complete characterisation of miRNAs, isomiRs and miRNA-mRNA interaction sites through miRNA-specific alignment tools / Urgese, G., Paciello, G., Ficarra, E., Macii, E., Acquaviva, A.. - ELETTRONICO. - (2015). (RNAi 2015: Short & Long Non-coding RNAs, 10th International Conference & Exhibition Oxford (UK) 24-26 March 2015). | 1-gen-2015 | URGESE, GIANVITOPACIELLO, GIULIAFICARRA, ELISAMACII, EnricoACQUAVIVA, ANDREA | Urgese-RNAi15_2.pdf |
| A Novel Pipeline for Identification and Prioritization of Gene Fusions in Patient-derived Xenografts of Metastatic Colorectal Cancer / Paciello, G., Acquaviva, A., Consalvo, P., Claudio, I., Enzo, M., Ficarra, E.. - (2014), pp. 142-148. (BIOSTEC 2014 Eseo, Angers, Loire Valley, France 3-6 March 2014) [10.5220/0004799401420148]. | 1-gen-2014 | PACIELLO, GIULIAACQUAVIVA, ANDREAFICARRA, ELISA + | - |
| Dynamic Gap Selector: A Smith Waterman Sequence Alignment Algorithm with Affine Gap Model Optimisation / Urgese, G., Paciello, G., Acquaviva, A., Ficarra, E., Graziano, M., Zamboni, M.. - STAMPA. - 2:(2014), pp. 1347-1358. (2nd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2014) Granada April 7-9 2014). | 1-gen-2014 | URGESE, GIANVITOPACIELLO, GIULIAACQUAVIVA, ANDREAFICARRA, ELISAGRAZIANO, MARIAGRAZIAZAMBONI, Maurizio | IWBBIO_2014_paper_143.pdf |
| miR-SEA: miRNA Seed Extension based Aligner Pipeline for NGS Expression Level Extraction / Urgese, G., Paciello, G., Isella, C., Medico, E., Macii, E., Ficarra, E., Acquaviva, A.. - STAMPA. - 2:(2014), pp. 1015-1026. (2nd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2014) Granada April 7-9 2014). | 1-gen-2014 | URGESE, GIANVITOPACIELLO, GIULIAMACII, EnricoFICARRA, ELISAACQUAVIVA, ANDREA + | IWBBIO_2014_paper_105.pdf |
| A novel pipeline for V(D)J junction identification using RNA-Seq paired-end reads / Paciello, G., Ficarra, E., Alberto, Z., Chiara, P., Carmelo, F., Abate, F., Macii, E., Acquaviva, A.. - STAMPA. - (2013). (Bioinformatics 2013, International Conference on Bioinformatics Models, Methods and Algorithms Barcelona, Spain 11-14 February 2013). | 1-gen-2013 | PACIELLO, GIULIAFICARRA, ELISAABATE, FRANCESCOMACII, EnricoACQUAVIVA, ANDREA + | Biostec_camera_ready.pdf |
| A NOVEL ANALYSIS FLOW FOR FUSED TRANSCRIPTS DISCOVERY FROM PAIRED-END RNA-SEQ DATA / Abate, F., Paciello, G., Acquaviva, A., Ficarra, E., Ferrarini, A., Delledonne, M., Macii, E.. - STAMPA. - (2012), pp. 331-334. (International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2012) Vilamoura, Algarve (Portugal) 1-4 February 2012) [10.5220/0003789003310334]. | 1-gen-2012 | ABATE, FRANCESCOPACIELLO, GIULIAACQUAVIVA, ANDREAFICARRA, ELISAMACII, Enrico + | - |
| A novel framework for chimeric transcript detection based on accurate gene fusion model / Abate, F., Acquaviva, A., Ficarra, E., Paciello, G., Macii, E., A., F., M., D., S., S., G., M.. - STAMPA. - (2011), pp. 34-41. (IEEE International Conference on Bioinformatics and Biomedicine Atlanta, Georgia (USA) 12-15 Nov. 2011) [10.1109/BIBMW.2011.6112352]. | 1-gen-2011 | ABATE, FRANCESCOACQUAVIVA, ANDREAFICARRA, ELISAPACIELLO, GIULIAMACII, Enrico + | 2443775-mod.pdf |
| Binding free energy calculation via Molecular Dynamics simulations for a miRNA:mRNA interaction / Paciello, G., Acquaviva, A., Ficarra, E., Deriu, M.A., Macii, E.. - STAMPA. - (2011), pp. 318-321. (Bioinformatics 2011, International Conference on Bioinformatics Models Methods and Algorithms Rome (IT) 26 - 29 January 2011). | 1-gen-2011 | PACIELLO, GIULIAACQUAVIVA, ANDREAFICARRA, ELISADERIU, MARCO AGOSTINOMACII, Enrico | - |