PACIELLO, GIULIA

PACIELLO, GIULIA  

014962  

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A NOVEL ANALYSIS FLOW FOR FUSED TRANSCRIPTS DISCOVERY FROM PAIRED-END RNA-SEQ DATA / Abate, Francesco; Paciello, Giulia; Acquaviva, Andrea; Ficarra, Elisa; Ferrarini, A.; Delledonne, M.; Macii, Enrico. - STAMPA. - (2012), pp. 331-334. ((Intervento presentato al convegno International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2012) tenutosi a Vilamoura, Algarve (Portugal) nel 1-4 February 2012 [10.5220/0003789003310334]. 1-gen-2012 ABATE, FRANCESCOPACIELLO, GIULIAACQUAVIVA, ANDREAFICARRA, ELISAMACII, Enrico + -
A Novel Pipeline for Identification and Prioritization of Gene Fusions in Patient-derived Xenografts of Metastatic Colorectal Cancer / Paciello, Giulia; Acquaviva, Andrea; Consalvo, Petti; Claudio, Isella; Enzo, Medico; Ficarra, Elisa. - (2014), pp. 142-148. ((Intervento presentato al convegno BIOSTEC 2014 tenutosi a Eseo, Angers, Loire Valley, France nel 3-6 March 2014 [10.5220/0004799401420148]. 1-gen-2014 PACIELLO, GIULIAACQUAVIVA, ANDREAFICARRA, ELISA + -
A novel pipeline for V(D)J junction identification using RNA-Seq paired-end reads / Paciello, Giulia; Ficarra, Elisa; Alberto, Zamò; Chiara, Pighi; Carmelo, Foti; Abate, Francesco; Macii, Enrico; Acquaviva, Andrea. - STAMPA. - (2013). ((Intervento presentato al convegno Bioinformatics 2013, International Conference on Bioinformatics Models, Methods and Algorithms tenutosi a Barcelona, Spain nel 11-14 February 2013. 1-gen-2013 PACIELLO, GIULIAFICARRA, ELISAABATE, FRANCESCOMACII, EnricoACQUAVIVA, ANDREA + Biostec_camera_ready.pdf
Binding free energy calculation via Molecular Dynamics simulations for a miRNA:mRNA interaction / Paciello, Giulia; Acquaviva, Andrea; Ficarra, Elisa; Deriu, MARCO AGOSTINO; Macii, Enrico. - STAMPA. - (2011), pp. 318-321. ((Intervento presentato al convegno Bioinformatics 2011, International Conference on Bioinformatics Models Methods and Algorithms tenutosi a Rome (IT) nel 26 - 29 January 2011. 1-gen-2011 PACIELLO, GIULIAACQUAVIVA, ANDREAFICARRA, ELISADERIU, MARCO AGOSTINOMACII, Enrico -
A COMBINED APPROACH TO DETECT RARE FUSION EVENTS IN ACUTE MYELOID LEUKEMIA / A., Padella; G., Simonetti; Paciello, Giulia; A., Ferrari; E., Zago; C., Baldazzi; V., Guadagnuolo; C., Papayannidis; V., Robustelli; E., Imbrogno; N., Testoni; M., Cavo; M., Delledonne; I., Iacobucci; Ct, Storlazzi; Ficarra, Elisa; G., Martinelli. - In: HAEMATOLOGICA. - ISSN 0390-6078. - ELETTRONICO. - 101:(2016), pp. 666-667. ((Intervento presentato al convegno 21st Congress Of The European Hematology Association tenutosi a Copenhagen, Denmark nel June 9–12, 2016. 1-gen-2016 PACIELLO, GIULIAFICARRA, ELISA + -
Detection of rearranged light chain sequences by RNA-Seq in B-cell lymphomas and reactive lymphadenopathies / Paciello, G.; Pighi, C.; Ficarra, E.; Zamo', A.. - (2016). ((Intervento presentato al convegno EAHP 2016: 18th Meeting of the European Association for Hemathopathology tenutosi a Basilea nel 3-8 Sept. 2016. 1-gen-2016 PACIELLO, GIULIAFICARRA, ELISA + -
Directly linking non-coding SNPs to changes in epithelial enhancer activity / Jacobs, J.; Christiaens, ; V, .; Potier, ; D, .; Svetlichnyy, ; D, .; Romanelli, ; L, .; Taskiran, Ihsan; I, .; Paciello, ; G, .; Aerts,. - (2016). ((Intervento presentato al convegno EMBL Transcription and Chromatin, Edition 12 tenutosi a Heidelberg nel 27-30 Aug 2016. 1-gen-2016 PACIELLO, GIULIA + -
Dynamic Gap Selector: A Smith Waterman Sequence Alignment Algorithm with Affine Gap Model Optimisation / Urgese, Gianvito; Paciello, Giulia; Acquaviva, Andrea; Ficarra, Elisa; Graziano, Mariagrazia; Zamboni, Maurizio. - STAMPA. - 2:(2014), pp. 1347-1358. ((Intervento presentato al convegno 2nd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2014) tenutosi a Granada nel April 7-9 2014. 1-gen-2014 URGESE, GIANVITOPACIELLO, GIULIAACQUAVIVA, ANDREAFICARRA, ELISAGRAZIANO, MARIAGRAZIAZAMBONI, Maurizio IWBBIO_2014_paper_143.pdf
geneEX a novel tool to assess differential expression from gene and exon sequencing data / SCICOLONE, ORAZIO MARIA; Paciello, Giulia; Ficarra, Elisa. - 3:(2018), pp. 174-181. ((Intervento presentato al convegno 9th International Conference on Bioinformatics Models, Methods and Algorithms, BIOINFORMATICS 2018 - Part of 11th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2018 tenutosi a Funchal - Madeira, Portugal nel 19-21 January, 2018. 1-gen-2018 SCICOLONE, ORAZIO MARIAPaciello, GiuliaFicarra, Elisa geneEX.pdf
isomiR-SEA: miRNA and isomiR expression level detection in seven RNA-Seq datasets / Urgese, Gianvito; Paciello, Giulia; Macii, Enrico; Acquaviva, Andrea; Ficarra, Elisa. - ELETTRONICO. - (2017). ((Intervento presentato al convegno Joint 25th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and 16th European Conference on Computational Biology (ECCB) 2017 tenutosi a Prague nel 21-25 July 2017 [10.7490/f1000research.1114698.1]. 1-gen-2017 URGESE, GIANVITOPACIELLO, GIULIAMACII, EnricoACQUAVIVA, ANDREAFICARRA, ELISA f1000research-173536_post_print.pdf
miR-SEA: miRNA Seed Extension based Aligner Pipeline for NGS Expression Level Extraction / Urgese, Gianvito; Paciello, Giulia; Isella, C.; Medico, E.; Macii, Enrico; Ficarra, Elisa; Acquaviva, Andrea. - STAMPA. - 2:(2014), pp. 1015-1026. ((Intervento presentato al convegno 2nd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2014) tenutosi a Granada nel April 7-9 2014. 1-gen-2014 URGESE, GIANVITOPACIELLO, GIULIAMACII, EnricoFICARRA, ELISAACQUAVIVA, ANDREA + IWBBIO_2014_paper_105.pdf
A novel framework for chimeric transcript detection based on accurate gene fusion model / Abate, Francesco; Acquaviva, Andrea; Ficarra, Elisa; Paciello, Giulia; Macii, Enrico; A., Ferrarini; M., Delledonne; S., Soverini; G., Martinelli. - STAMPA. - (2011), pp. 34-41. ((Intervento presentato al convegno IEEE International Conference on Bioinformatics and Biomedicine tenutosi a Atlanta, Georgia (USA) nel 12-15 Nov. 2011 [10.1109/BIBMW.2011.6112352]. 1-gen-2011 ABATE, FRANCESCOACQUAVIVA, ANDREAFICARRA, ELISAPACIELLO, GIULIAMACII, Enrico + 2443775-mod.pdf
On the relevance of a complete characterisation of miRNAs, isomiRs and miRNA-mRNA interaction sites through miRNA-specific alignment tools / Urgese, Gianvito; Paciello, Giulia; Ficarra, Elisa; Macii, Enrico; Acquaviva, Andrea. - ELETTRONICO. - (2015). ((Intervento presentato al convegno RNAi 2015: Short & Long Non-coding RNAs, 10th International Conference & Exhibition tenutosi a Oxford (UK) nel 24-26 March 2015. 1-gen-2015 URGESE, GIANVITOPACIELLO, GIULIAFICARRA, ELISAMACII, EnricoACQUAVIVA, ANDREA Urgese-RNAi15_2.pdf