We present a new thermodynamic model to investigate therelativeeffects of excluded volume and soft interaction contributions in determiningwhether a cosolute will either destabilize or stabilize a proteinin solution. This model is unique in considering an atomisticallydetailed model of the protein and accounting for the preferentialaccumulation/exclusion of the osmolyte molecules from the proteinsurface. Importantly, we use molecular dynamics simulations and experimentsto validate the model. The experimental approach presents a uniquemeans of decoupling excluded volume and soft interaction contributionsusing a linear polymeric series of cosolutes with different numbersof glucose subunits, from 1 (glucose) to 8 (maltooctaose), as wellas an 8-mer of glucose units in the closed form (& gamma;-CD). By studyingthe stabilizing effect of cosolutes along this polymeric series usinglysozyme as a model protein, we validate the thermodynamic model andshow that sugars stabilize proteins according to an excluded volumemechanism.

Thermodynamic modeling and experimental data reveal that sugars stabilize proteins according to an excluded volume mechanism / Arsiccio, Andrea; Sarter, Tim; Polidori, Ilaria; Winter, Gerhard; Pisano, Roberto; Shea, Joan-Emma. - In: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. - ISSN 1520-5126. - 145:30(2023), pp. 16678-16690. [10.1021/jacs.3c04293]

Thermodynamic modeling and experimental data reveal that sugars stabilize proteins according to an excluded volume mechanism

Andrea Arsiccio;Roberto Pisano;
2023

Abstract

We present a new thermodynamic model to investigate therelativeeffects of excluded volume and soft interaction contributions in determiningwhether a cosolute will either destabilize or stabilize a proteinin solution. This model is unique in considering an atomisticallydetailed model of the protein and accounting for the preferentialaccumulation/exclusion of the osmolyte molecules from the proteinsurface. Importantly, we use molecular dynamics simulations and experimentsto validate the model. The experimental approach presents a uniquemeans of decoupling excluded volume and soft interaction contributionsusing a linear polymeric series of cosolutes with different numbersof glucose subunits, from 1 (glucose) to 8 (maltooctaose), as wellas an 8-mer of glucose units in the closed form (& gamma;-CD). By studyingthe stabilizing effect of cosolutes along this polymeric series usinglysozyme as a model protein, we validate the thermodynamic model andshow that sugars stabilize proteins according to an excluded volumemechanism.
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/11583/2985174