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Acceleration of Coarse Grain Molecular Dynamics on GPU Architectures
2013 Shkurti, Ardita; Mario, Orsi; Macii, Enrico; Ficarra, Elisa; Acquaviva, Andrea
Fast and Accurate Simulation Framework Targeting Molecular Dynamics for Cells Substructures
2013 Shkurti, Ardita
Optimization of Molecular Dynamics Simulations from a High Performance Computing Viewpoint
2013 Shkurti, Ardita; Mario, Orsi; Acquaviva, Andrea; Ficarra, Elisa; Macii, Enrico; Sophia, Wheeler; Jonathan W., Essex
CHARACTERIZATION OF COARSE GRAIN MOLECULAR DYNAMIC SIMULATION PERFORMANCE ON GRAPHIC PROCESSING UNIT ARCHITECTURES
2012 Shkurti, Ardita; Acquaviva, Andrea; Ficarra, Elisa; Orsi, M.; Macii, Enrico
Characterization of coarse grain molecular dynamic simulation performance ongraphic processing unit architectures
2012 Shkurti, Ardita; Acquaviva, Andrea; Ficarra, Elisa; Orsi, Mario; Macii, Enrico
Multiscale Modelling of Cellular Actin Filaments: From Atomistic Molecular to Coarse Grained Dynamics
2012 Deriu, MARCO AGOSTINO; Shkurti, Ardita; Paciello, Giulia; Bidone, TAMARA CARLA; Morbiducci, Umberto; Ficarra, Elisa; Audenino, Alberto; Acquaviva, Andrea
Towards Low Cost Virtual Biological Laboratories: Molecular Modelling Simulation on Commodity Hardware.
2012 Shkurti, Ardita; Acquaviva, Andrea; Ficarra, Elisa; Orsi, M.; Macii, Enrico; Essex, J. W.
GPU Acceleration of Simulation Tool for Lipid-Bilayers
2010 Shkurti, Ardita; Acquaviva, Andrea; Ficarra, Elisa; Mario, Orsi; Martino, Ruggiero; Macii, Enrico
| Citazione | Data di pubblicazione | Autori | File |
|---|---|---|---|
| Acceleration of Coarse Grain Molecular Dynamics on GPU Architectures / Shkurti, Ardita; Mario, Orsi; Macii, Enrico; Ficarra, Elisa; Acquaviva, Andrea. - In: JOURNAL OF COMPUTATIONAL CHEMISTRY. - ISSN 0192-8651. - STAMPA. - 34:10(2013), pp. 803-818. [10.1002/jcc.23183] | 1-gen-2013 | SHKURTI, ARDITAMACII, EnricoFICARRA, ELISAACQUAVIVA, ANDREA + | jccSHKURTI.pdf |
| Fast and Accurate Simulation Framework Targeting Molecular Dynamics for Cells Substructures / Shkurti, Ardita. - STAMPA. - (2013 Mar 15). | 15-mar-2013 | SHKURTI, ARDITA | Part_3_Shkurti-PhDThesis.pdf; Part_5_Shkurti-PhDThesis.pdf; Part_2_Shkurti-PhDThesis.pdf; Part_1_Shkurti-PhDThesis.pdf; Part_4_Shkurti-PhDThesis.pdf; Part_7_Shkurti-PhDThesis.pdf; Part_8_Shkurti-PhDThesis.pdf; Part_9_Shkurti-PhDThesis.pdf; Part_6_Shkurti-PhDThesis.pdf |
| Optimization of Molecular Dynamics Simulations from a High Performance Computing Viewpoint / Shkurti, Ardita; Mario, Orsi; Acquaviva, Andrea; Ficarra, Elisa; Macii, Enrico; Sophia, Wheeler; Jonathan W., Essex. - (2013). (Intervento presentato al convegno 2nd Annual CCP Bio-Sim Conference: Frontiers of Biomolecular Simulations tenutosi a Nottingham, United Kingdom nel 25-27 March 2013). | 1-gen-2013 | SHKURTI, ARDITAACQUAVIVA, ANDREAFICARRA, ELISAMACII, Enrico + | - |
| CHARACTERIZATION OF COARSE GRAIN MOLECULAR DYNAMIC SIMULATION PERFORMANCE ON GRAPHIC PROCESSING UNIT ARCHITECTURES / Shkurti, Ardita; Acquaviva, Andrea; Ficarra, Elisa; Orsi, M.; Macii, Enrico. - STAMPA. - (2012), pp. 339-342. (Intervento presentato al convegno International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2012) tenutosi a Vilamoura, Algarve (Portugal) nel 1-4 Feb 2012) [10.5220/0003790703390342]. | 1-gen-2012 | SHKURTI, ARDITAACQUAVIVA, ANDREAFICARRA, ELISAMACII, Enrico + | - |
| Characterization of coarse grain molecular dynamic simulation performance ongraphic processing unit architectures / Shkurti, Ardita; Acquaviva, Andrea; Ficarra, Elisa; Orsi, Mario; Macii, Enrico. - (2012), pp. 339-342. (Intervento presentato al convegno International Conference on Bioinformatics Models, Methods and Algorithms, BIOINFORMATICS 2012 tenutosi a Vilamoura, Algarve, prt nel 2012). | 1-gen-2012 | Shkurti, ArditaAcquaviva, AndreaFicarra, ElisaMacii, Enrico + | - |
| Multiscale Modelling of Cellular Actin Filaments: From Atomistic Molecular to Coarse Grained Dynamics / Deriu, MARCO AGOSTINO; Shkurti, Ardita; Paciello, Giulia; Bidone, TAMARA CARLA; Morbiducci, Umberto; Ficarra, Elisa; Audenino, Alberto; Acquaviva, Andrea. - In: PROTEINS. - ISSN 0887-3585. - ELETTRONICO. - 80:6(2012), pp. 1598-1609. [10.1002/prot.24053] | 1-gen-2012 | DERIU, MARCO AGOSTINOSHKURTI, ARDITAPACIELLO, GIULIABIDONE, TAMARA CARLAMORBIDUCCI, UMBERTOFICARRA, ELISAAUDENINO, AlbertoACQUAVIVA, ANDREA | - |
| Towards Low Cost Virtual Biological Laboratories: Molecular Modelling Simulation on Commodity Hardware / Shkurti, Ardita; Acquaviva, Andrea; Ficarra, Elisa; Orsi, M.; Macii, Enrico; Essex, J. W.. - (2012). (Intervento presentato al convegno Young Modellers Forum tenutosi a Londra nel Novembre 2012). | 1-gen-2012 | SHKURTI, ARDITAACQUAVIVA, ANDREAFICARRA, ELISAMACII, Enrico + | - |
| GPU Acceleration of Simulation Tool for Lipid-Bilayers / Shkurti, Ardita; Acquaviva, Andrea; Ficarra, Elisa; Mario, Orsi; Martino, Ruggiero; Macii, Enrico. - STAMPA. - (2010), pp. 849-850. (Intervento presentato al convegno IEEE International Conference on Bioinformatics and Biomedicine tenutosi a Hong Kong nel 18-21 Dec 2010). | 1-gen-2010 | SHKURTI, ARDITAACQUAVIVA, ANDREAFICARRA, ELISAMACII, Enrico + | - |