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adabmDCA 2.0—A Flexible but Easy-to-Use Package for Direct Coupling Analysis
2026 Rosset, Lorenzo; Netti, Roberto; Muntoni, Anna Paola; Weigt, Martin; Zamponi, Francesco
Fluctuations and the limit of predictability in protein evolution
2025 Rossi, Saverio; Di Bari, Leonardo; Weigt, Martin; Zamponi, Francesco
Emergent time scales of epistasis in protein evolution
2024 Di Bari, L.; Bisardi, M.; Cotogno, S.; Weigt, M.; Zamponi, F.
adabmDCA: adaptive Boltzmann machine learning for biological sequences
2021 Muntoni, Anna Paola; Pagnani, Andrea; Weigt, Martin; Zamponi, Francesco
Sparse generative modeling via parameter reduction of Boltzmann machines: Application to protein-sequence families
2021 Barrat-Charlaix, Pierre; Muntoni, Anna Paola; Shimagaki, Kai; Weigt, Martin; Zamponi, Francesco
| Citazione | Data di pubblicazione | Autori | File |
|---|---|---|---|
| adabmDCA 2.0—A Flexible but Easy-to-Use Package for Direct Coupling Analysis / Rosset, Lorenzo; Netti, Roberto; Muntoni, Anna Paola; Weigt, Martin; Zamponi, Francesco (METHODS IN MOLECULAR BIOLOGY). - In: Protein Evolution[s.l] : Springer, 2026. - ISBN 9781071648278. - pp. 83-104 [10.1007/978-1-0716-4828-5_6] | 1-gen-2026 | Netti, RobertoMuntoni, Anna PaolaZamponi, Francesco + | 2501.18456v1.pdf; 978-1-0716-4828-5_6 (1).pdf |
| Fluctuations and the limit of predictability in protein evolution / Rossi, Saverio; Di Bari, Leonardo; Weigt, Martin; Zamponi, Francesco. - In: REPORTS ON PROGRESS IN PHYSICS. - ISSN 0034-4885. - 88:7(2025), pp. 1-15. [10.1088/1361-6633/adea92] | 1-gen-2025 | Saverio RossiLeonardo Di BariFrancesco Zamponi + | pdf.pdf |
| Emergent time scales of epistasis in protein evolution / Di Bari, L.; Bisardi, M.; Cotogno, S.; Weigt, M.; Zamponi, F.. - In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. - ISSN 0027-8424. - 121:40(2024), pp. 1-10. [10.1073/pnas.2406807121] | 1-gen-2024 | Di Bari L.Bisardi M.Zamponi F. + | pdf.pdf |
| adabmDCA: adaptive Boltzmann machine learning for biological sequences / Muntoni, Anna Paola; Pagnani, Andrea; Weigt, Martin; Zamponi, Francesco. - In: BMC BIOINFORMATICS. - ISSN 1471-2105. - 22:1(2021), pp. 1-19. [10.1186/s12859-021-04441-9] | 1-gen-2021 | Muntoni, Anna PaolaPagnani, AndreaZamponi, Francesco + | s12859-021-04441-9.pdf |
| Sparse generative modeling via parameter reduction of Boltzmann machines: Application to protein-sequence families / Barrat-Charlaix, Pierre; Muntoni, Anna Paola; Shimagaki, Kai; Weigt, Martin; Zamponi, Francesco. - In: PHYSICAL REVIEW. E. - ISSN 2470-0045. - 104:2(2021), pp. 1-20. [10.1103/physreve.104.024407] | 1-gen-2021 | Barrat-Charlaix, PierreMuntoni, Anna PaolaZamponi, Francesco + | PhysRevE.104.024407.pdf; 2011.11259v3.pdf |