Archivio Istituzionale della RicercaWe review the TD-WGcluster (time delayed weighted edge clustering) software integrating static interaction networks with time series data in order to detect modules of nodes between which the information flows at similar time delays and intensities. The software has represented an advancement of the state of the art in the software for the identification of connected components due to its peculiarity of dealing with direct and weighted graphs, where the attributes of the physical entities represented by nodes vary over time. This chapter aims to deepen those theoretical aspects of the clustering model implemented by TD-WGcluster that may be of greater interest to the user. We show the instructions necessary to run the software through some exploratory cases and comment on the results obtained.
On TD-WGcluster - theoretical foundations and guidelines for the user / Re, A; Lecca, P (METHODS IN MOLECULAR BIOLOGY). - In: Methods Mol BiolELETTRONICO. - [s.l] : Springer, 2020. - ISBN 978-1-4939-9875-3. - pp. 233-262 [10.1007/978-1-4939-9873-9_17]
On TD-WGcluster - theoretical foundations and guidelines for the user
Re A;
2020
Abstract
We review the TD-WGcluster (time delayed weighted edge clustering) software integrating static interaction networks with time series data in order to detect modules of nodes between which the information flows at similar time delays and intensities. The software has represented an advancement of the state of the art in the software for the identification of connected components due to its peculiarity of dealing with direct and weighted graphs, where the attributes of the physical entities represented by nodes vary over time. This chapter aims to deepen those theoretical aspects of the clustering model implemented by TD-WGcluster that may be of greater interest to the user. We show the instructions necessary to run the software through some exploratory cases and comment on the results obtained.
| File | Dimensione | Formato | |
|---|---|---|---|
|
On TD-WGcluster Theoretical Foundations and Guidelines for the User In Protein Protein interaction networks.pdf
non disponibili
Tipologia:
2a Post-print versione editoriale / Version of Record
Licenza:
Non Pubblico - Accesso privato/ristretto
Dimensione
11.55 MB
Formato
Adobe PDF
|
11.55 MB | Adobe PDF | Visualizza/Apri Richiedi una copia |
Pubblicazioni consigliate
I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.
https://hdl.handle.net/11583/2970553