Archivio Istituzionale della RicercaSfoglia per Autore
Inference algorithms for gene networks: A statistical-mechanics analysis
2008 Braunstein, Alfredo; Pagnani, Andrea; M., Weigt; Zecchina, Riccardo
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence
2008 Lourdes Peña, Castillo; Murat, Tasan; Chad L., Myers; Hyunju, Lee; Trupti, Joshi; Chao, Zhang; Yuanfang, Guan; Michele, Leone; Pagnani, Andrea; Wan, Kim; Chase, Krumpelman; Weidong, Tian; Guillaume, Obozinski; Yanjun, Qi; Sara, Mostafavi; Guan, Lin; Gabriel F., Berriz; Francis D., Gibbons; Gert, Lanckriet; Jian, Qiu; Charles, Grant; Zafer, Barutcuoglu; David P., Hill; David Warde, Farley; Chris, Grouios; Debajyoti, Ray; Judith A., Blake; Minghua, Deng; Michael I., Jordan; William S., Noble; Quaid, Morris; Judith Klein, Seetharaman; Ziv Bar, Joseph; Ting, Chen; Fengzhu, Sun; Olga G., Troyanskaya; Edward M., Marcotte; Dong, Xu; Timothy R., Hughes; Frederick P., Roth
Estimating the size of the solution space of metabolic networks
2008 Braunstein, Alfredo; Mulet, R; Pagnani, Andrea
The importance of dilution in the inference of biological networks
2009 Lage-Castellanos, A.; Pagnani, A.; Weigt, M.
Statistical mechanics of sparse generalization and graphical model selection
2009 Alejandro Lage, Castellanos; Pagnani, Andrea; Martin, Weigt
Classification and sparse-signature extraction from gene-expression data
2009 Pagnani, Andrea; Francesca, Tria; Martin, Weigt
Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach
2010 Bailly Bechet, M.; Braunstein, Alfredo; Pagnani, Andrea; Weigt, M.; Zecchina, Riccardo
A discrete model of water with two distinct glassy phases
2010 Pagnani, Andrea; Pretti, M.
A stochastic local search approach to language tree reconstruction
2010 Francesca, Tria; Emanuele, Caglioti; Vittorio, Loreto; Pagnani, Andrea
A Stochastic Local Search Algorithm for Distance-Based Phylogeny Reconstruction
2010 F., Tria; E., Caglioti; V., Loreto; Pagnani, Andrea
Protein 3D Structure Computed from Evolutionary Sequence Variation
2011 Marks, D. S.; Colwell, L. J.; Sheridan, R.; Hopf, T. A.; Pagnani, Andrea; Zecchina, Riccardo; Sander, C.
Direct-coupling analysis of residue coevolution captures native contacts across many protein families
2011 Morcos, F.; Pagnani, Andrea; Lunt, B.; Bertolino, A.; Marks, D. S.; Sander, C.; Zecchina, Riccardo; Onuchic, J. N.; Hwa, T.; Weigt, M.
Information theoretic and machine learning approaches to quantify non-linear visual feature interaction underlying visual object recognition
2012 Alireza Alemi, Neissi; Baldassi, Carlo; Braunstein, Alfredo; Pagnani, Andrea; Zecchina, Riccardo; Davide, Zoccolan
Genome-wide analysis identifies a functional association of Tet1 and Polycomb repressive complex 2 in mouse embryonic stem cells
2013 Francesco, Neri; Danny, Incarnato; Anna, Krepelova; Stefania, Rapelli; Pagnani, Andrea; Zecchina, Riccardo; Caterina, Parlato; Salvatore, Oliviero
Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments
2013 Ala, U.; Karreth, F. A.; Bosia, C.; Pagnani, Andrea; Taulli, R.; Léopold, V.; Tay, Y.; Provero, P.; Zecchina, Riccardo; Pandolfi, P. P.
Inter-individual variation in nucleotide excision repair pathway is modulated by non-synonymous polymorphisms in ERCC4 and MBD4 genes
2013 Alessandra, Allione; Simonetta, Guarrera; Alessia, Russo; Fulvio, Ricceri; Rituraj, Purohit; Pagnani, Andrea; Fabio, Rosa; Silvia, Polidoro; Floriana, Voglino; Giuseppe, Matullo
Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem
2013 Tuncbag, N.; Braunstein, Alfredo; Pagnani, Andrea; Huang, S. S. C.; Chayes, J.; Borgs, C.; Zecchina, Riccardo; Fraenkel, E.
Stability of the replica symmetric solution in diluted perceptron learning
2013 Alejandro, Lage Castellanos; Pagnani, Andrea; Gretel, Quintero Angulo
Multisurface coding simulations of the restricted solid-on-solid model in four dimensions
2013 Pagnani, Andrea; Giorgio, Parisi
Modelling Competing Endogenous RNA Networks
2013 Bosia, C; Pagnani, Andrea; Zecchina, Riccardo; Bosia, Carla
| Citazione | Data di pubblicazione | Autori | File |
|---|---|---|---|
| Inference algorithms for gene networks: A statistical-mechanics analysis / Braunstein, Alfredo; Pagnani, Andrea; M., Weigt; Zecchina, Riccardo. - In: JOURNAL OF STATISTICAL MECHANICS: THEORY AND EXPERIMENT. - ISSN 1742-5468. - (2008), p. P12001. [10.1088/1742-5468/2008/12/P12001] | 1-gen-2008 | BRAUNSTEIN, ALFREDOPAGNANI, ANDREAZECCHINA, RICCARDO + | - |
| A critical assessment of Mus musculus gene function prediction using integrated genomic evidence / Lourdes Peña, Castillo; Murat, Tasan; Chad L., Myers; Hyunju, Lee; Trupti, Joshi; Chao, Zhang; Yuanfang, Guan; Michele, Leone; Pagnani, Andrea; Wan, Kim; Chase, Krumpelman; Weidong, Tian; Guillaume, Obozinski; Yanjun, Qi; Sara, Mostafavi; Guan, Lin; Gabriel F., Berriz; Francis D., Gibbons; Gert, Lanckriet; Jian, Qiu; Charles, Grant; Zafer, Barutcuoglu; David P., Hill; David Warde, Farley; Chris, Grouios; Debajyoti, Ray; Judith A., Blake; Minghua, Deng; Michael I., Jordan; William S., Noble; Quaid, Morris; Judith Klein, Seetharaman; Ziv Bar, Joseph; Ting, Chen; Fengzhu, Sun; Olga G., Troyanskaya; Edward M., Marcotte; Dong, Xu; Timothy R., Hughes; Frederick P., Roth. - In: GENOME BIOLOGY. - ISSN 1474-760X. - 9:(2008), p. S2. [10.1186/gb-2008-9-s1-s2] | 1-gen-2008 | PAGNANI, ANDREA + | - |
| Estimating the size of the solution space of metabolic networks / Braunstein, Alfredo; Mulet, R; Pagnani, Andrea. - In: BMC BIOINFORMATICS. - ISSN 1471-2105. - 9:(2008). [10.1186/1471-2105-9-240] | 1-gen-2008 | BRAUNSTEIN, ALFREDOPAGNANI, ANDREA + | - |
| The importance of dilution in the inference of biological networks / Lage-Castellanos, A.; Pagnani, A.; Weigt, M.. - (2009), pp. 531-538. (Intervento presentato al convegno 2009 47th Annual Allerton Conference on Communication, Control, and Computing, Allerton 2009 tenutosi a Monticello, IL, USA nel 2009) [10.1109/ALLERTON.2009.5394907]. | 1-gen-2009 | Pagnani A. + | - |
| Statistical mechanics of sparse generalization and graphical model selection / Alejandro Lage, Castellanos; Pagnani, Andrea; Martin, Weigt. - In: JOURNAL OF STATISTICAL MECHANICS: THEORY AND EXPERIMENT. - ISSN 1742-5468. - 2009:(2009), p. P10009. [10.1088/1742-5468/2009/10/P10009] | 1-gen-2009 | PAGNANI, ANDREA + | - |
| Classification and sparse-signature extraction from gene-expression data / Pagnani, Andrea; Francesca, Tria; Martin, Weigt. - In: JOURNAL OF STATISTICAL MECHANICS: THEORY AND EXPERIMENT. - ISSN 1742-5468. - 2009:(2009), p. P05001. [10.1088/1742-5468/2009/05/P05001] | 1-gen-2009 | PAGNANI, ANDREA + | - |
| Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach / Bailly Bechet, M.; Braunstein, Alfredo; Pagnani, Andrea; Weigt, M.; Zecchina, Riccardo. - In: BMC BIOINFORMATICS. - ISSN 1471-2105. - 11:(2010), p. 355. [10.1186/1471-2105-11-355] | 1-gen-2010 | BRAUNSTEIN, ALFREDOPAGNANI, ANDREAZECCHINA, RICCARDO + | - |
| A discrete model of water with two distinct glassy phases / Pagnani, Andrea; Pretti, M.. - In: EUROPHYSICS LETTERS. - ISSN 0295-5075. - 92:(2010), p. 46008. [10.1209/0295-5075/92/46008] | 1-gen-2010 | PAGNANI, ANDREAM. Pretti | - |
| A stochastic local search approach to language tree reconstruction / Francesca, Tria; Emanuele, Caglioti; Vittorio, Loreto; Pagnani, Andrea. - In: DIACHRONICA. - ISSN 0176-4225. - 27:(2010), pp. 341-358. [10.1075/dia.27.2.09tri] | 1-gen-2010 | PAGNANI, ANDREA + | - |
| A Stochastic Local Search Algorithm for Distance-Based Phylogeny Reconstruction / F., Tria; E., Caglioti; V., Loreto; Pagnani, Andrea. - In: MOLECULAR BIOLOGY AND EVOLUTION. - ISSN 0737-4038. - 27:(2010), pp. 2587-2595. [10.1093/molbev/msq154] | 1-gen-2010 | PAGNANI, ANDREA + | - |
| Protein 3D Structure Computed from Evolutionary Sequence Variation / Marks, D. S.; Colwell, L. J.; Sheridan, R.; Hopf, T. A.; Pagnani, Andrea; Zecchina, Riccardo; Sander, C.. - In: PLOS ONE. - ISSN 1932-6203. - ELETTRONICO. - 6:(2011), p. e28766. [10.1371/journal.pone.0028766] | 1-gen-2011 | PAGNANI, ANDREAZECCHINA, RICCARDO + | journal.pone.0028766.pdf |
| Direct-coupling analysis of residue coevolution captures native contacts across many protein families / Morcos, F.; Pagnani, Andrea; Lunt, B.; Bertolino, A.; Marks, D. S.; Sander, C.; Zecchina, Riccardo; Onuchic, J. N.; Hwa, T.; Weigt, M.. - In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. - ISSN 0027-8424. - STAMPA. - 108:(2011), pp. 1293-1301. [10.1073/pnas.1111471108] | 1-gen-2011 | PAGNANI, ANDREAZECCHINA, RICCARDO + | - |
| Information theoretic and machine learning approaches to quantify non-linear visual feature interaction underlying visual object recognition / Alireza Alemi, Neissi; Baldassi, Carlo; Braunstein, Alfredo; Pagnani, Andrea; Zecchina, Riccardo; Davide, Zoccolan. - In: BMC NEUROSCIENCE. - ISSN 1471-2202. - 13:(2012), p. P2. (Intervento presentato al convegno CNS*12) [10.1186/1471-2202-13-S1-P2]. | 1-gen-2012 | BALDASSI, CARLOBRAUNSTEIN, ALFREDOPAGNANI, ANDREAZECCHINA, RICCARDO + | - |
| Genome-wide analysis identifies a functional association of Tet1 and Polycomb repressive complex 2 in mouse embryonic stem cells / Francesco, Neri; Danny, Incarnato; Anna, Krepelova; Stefania, Rapelli; Pagnani, Andrea; Zecchina, Riccardo; Caterina, Parlato; Salvatore, Oliviero. - In: GENOME BIOLOGY. - ISSN 1474-760X. - STAMPA. - 14:(2013), p. R91. [10.1186/gb-2013-14-8-r91] | 1-gen-2013 | PAGNANI, ANDREAZECCHINA, RICCARDO + | - |
| Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments / Ala, U.; Karreth, F. A.; Bosia, C.; Pagnani, Andrea; Taulli, R.; Léopold, V.; Tay, Y.; Provero, P.; Zecchina, Riccardo; Pandolfi, P. P.. - In: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. - ISSN 0027-8424. - 110:18(2013), pp. 7154-7159. [10.1073/pnas.1222509110] | 1-gen-2013 | Bosia C.PAGNANI, ANDREAZECCHINA, RICCARDO + | - |
| Inter-individual variation in nucleotide excision repair pathway is modulated by non-synonymous polymorphisms in ERCC4 and MBD4 genes / Alessandra, Allione; Simonetta, Guarrera; Alessia, Russo; Fulvio, Ricceri; Rituraj, Purohit; Pagnani, Andrea; Fabio, Rosa; Silvia, Polidoro; Floriana, Voglino; Giuseppe, Matullo. - In: MUTATION RESEARCH. - ISSN 0027-5107. - 751-752:(2013), pp. 49-54. [10.1016/j.mrfmmm.2013.08.005] | 1-gen-2013 | PAGNANI, ANDREA + | - |
| Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem / Tuncbag, N.; Braunstein, Alfredo; Pagnani, Andrea; Huang, S. S. C.; Chayes, J.; Borgs, C.; Zecchina, Riccardo; Fraenkel, E.. - In: JOURNAL OF COMPUTATIONAL BIOLOGY. - ISSN 1066-5277. - 20:2(2013), pp. 124-136. [10.1089/cmb.2012.0092] | 1-gen-2013 | BRAUNSTEIN, ALFREDOPAGNANI, ANDREAZECCHINA, RICCARDO + | - |
| Stability of the replica symmetric solution in diluted perceptron learning / Alejandro, Lage Castellanos; Pagnani, Andrea; Gretel, Quintero Angulo. - In: JOURNAL OF STATISTICAL MECHANICS: THEORY AND EXPERIMENT. - ISSN 1742-5468. - ELETTRONICO. - 2013:(2013), p. L02002. [10.1088/1742-5468/2013/02/L02002] | 1-gen-2013 | PAGNANI, ANDREA + | - |
| Multisurface coding simulations of the restricted solid-on-solid model in four dimensions / Pagnani, Andrea; Giorgio, Parisi. - In: PHYSICAL REVIEW E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS. - ISSN 1539-3755. - STAMPA. - 87:(2013). [10.1103/PhysRevE.87.010102] | 1-gen-2013 | PAGNANI, ANDREA + | 2523488.pdf |
| Modelling Competing Endogenous RNA Networks / Bosia, C; Pagnani, Andrea; Zecchina, Riccardo; Bosia, Carla. - In: PLOS ONE. - ISSN 1932-6203. - 8:(2013), p. e1003167. [10.1371/journal.pone.0066609] | 1-gen-2013 | PAGNANI, ANDREAZECCHINA, RICCARDOBOSIA, CARLA + | journal.pone.0066609.pdf |
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